BAC Information

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BAC

Clone NameMSMg01-121C10
ChromosomeX (Build37)
Map Location 152,014,622 - 152,014,851
singlet/doubletsinglet
Overlap genePtchd1
Upstream geneLOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394
Downstream gene4930503H13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121C10.T7 (MSMg01no121_c10.b1)MSMg01-121C10.TJ (MSMg01no121_c10.g1)
ACCAG331336AG331337
length738701
length of high quality
(start - end)
265 (64 - 328)234 (127 - 360)
definitionCHROMAT_FILE: MSMg01no121_c10.b1 PHD_FILE: MSMg01no121_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:50 2005CHROMAT_FILE: MSMg01no121_c10.g1 PHD_FILE: MSMg01no121_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAATACACTCCTATACGGAGAGATCCGCGGATTCTACAGAATG
ACCACAGAATCAATAAGATGGACCTTTGGGGCTCTCAGAGATTGAACCAC
CAACCAAAGAACCTACATGCACTGGACTTAGGCCTCCCTGCTCATATTCA
GTAGAAGATGTGCAGCTTGGTCTTCATGTAGGTCCTAAACAGCTGGAGTA
GGAACTATGCCAAAAGCTGTTCTGTGTCCATAGGACATGTTCTCCTAGCT
TGACTGCCTTGCCTGGCCTCAGTGGAAGAGGATGCACCTAGCCTCTCAAA
AAACTTGATATGCCAAGGTGGCAGGATACCCAGGGTGGGGACATCTGCTC
TTAAGAGCACCCCAGGGGGTGAGGGAAGGATTGTGCAAGCCCGGTGACAA
AGCCGACAACATAAAAAAAACTTATTAGAGTAATAAATCCAGCAGTCCAC
AGAGAAAAAAAAAACAATTATACCGGAGCTAAGACTTAACAATAGATATA
ACACTTAATCATTATTATACCCACAATAAAATATAAAAACTAACAAAGAA
AAAAAGAAAAACAAGAGACAAGAAAAAAGAAAAATAATAAAGAGAATAAA
GGAGAAATAATATGGTTAACAAATAGACGATAAATAGAAAAAAATACATA
CGCCAACGAAACAGACAAATATTAAGACAAAGCATAGTCAAAATATTATC
ACCCAAAACTCACAAAAGAATTAGTAAAAATAAAAACA
CCGATGCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTAGCAAATAGTTGAGAGTTAAC
TCTAACCAGTAGAAATGTTTCTCCCAATCTGCTCATAAAGTGACTCATGT
TTTAAAGTTATTTAATGTTTTTTTTTTTTTTTTTTTTAATGAGACCTTCT
GGGAGATTTGATTTTGCTTGCTTGCTGTGTTAATGACTAATCATAGGAAT
CGATCTACTCTGTACTTCTGCAATTTTGTGTTTAGGTTTTCCTTGGTCCT
ATATTTCCTTATCTTCCCCAAAGCTCACAGACACAGCATGGAAACTGCTG
CCTTTGGATGTTCCTTACGCTTTTTCAGGTTTTAATGCCTTTCCTACTAC
CAGGGATGTCCTCAGCTTTGGATCCACGAGGAATTGTTGAGAAAAGTTAC
AATAAGAGGGCTTACTGGTAGATCATCTTTAAGTTTCAGTATGAAAATGT
GTAATGTCAAGAGAAAGTGAAGTCACCTATAATGCACCTGTAACAAATTC
CATATATGGAAACAAACAAGCATATTCATCTAAAAATACCATAGATTACA
AACTACTTAAAATATACTTTACTCTTATGCAAGTTTCATGATATAGCCCA
TGTTTATAAAATACTTTTCTTCGATAACATCTGCATAAATTTATGATGTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_c10.g1 MSMg01no121_c10.g1 CHROMAT_FILE:
MSMg01no121_c10.g1 PHD_FILE: MSMg01no121_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:50 2005
         (234 letters)



>mm_chrX_152014418_152015051
          Length = 634

 Score =  426 bits (220), Expect = e-124
 Identities = 229/234 (97%), Gaps = 4/234 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctgctcataaagtgactcatgttttaaagttatttaatgttttttttttttttttttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 205 atctgctcataaagtgactcatgttttaaagttatttaatgtttttttttttttttt--- 261

                                                                       
Query: 61  taatgagaccttctgggagatttgattttgcttgcttgctgtgttaatgactaatcatag 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 -aatgagaccttctgggagatttgattttgcttgcttgctgtgttaatgactaatcatag 320

                                                                       
Query: 121 gaatcgatctactctgtacttctgcaattttgtgtttaggttttccttggtcctatattt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gaatcgatctactctgtacttctgcaattttgtgtttaggtttttcttggtcctatattt 380

                                                                 
Query: 181 ccttatcttccccaaagctcacagacacagcatggaaactgctgcctttggatg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttatcttccccaaagctcacagacacagcatggaaactgctgcctttggatg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)