BAC Information

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BAC

Clone NameMSMg01-121L20
ChromosomeX (Build37)
Map Location 163,856,283 - 163,978,870
singlet/doubletdoublet
Overlap geneEG627311, Frmpd4
Upstream geneOfd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2
Downstream geneEG667822, EG637566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121L20.T7 (MSMg01no121_l20.b1)MSMg01-121L20.TJ (MSMg01no121_l20.g1)
ACCAG331776AG331777
length714718
length of high quality
(start - end)
203 (71 - 273)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no121_l20.b1 PHD_FILE: MSMg01no121_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:37 2005CHROMAT_FILE: MSMg01no121_l20.g1 PHD_FILE: MSMg01no121_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,978,668 - 163,978,870)(163,856,283 - 163,856,572)
sequence
TCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGC
GGAATTCTGCATTTCCATAAATATTGCTCTATTAACATGAGCATGTTCAA
GTTTGTTCACTACAACCTCTACTTCTGGAATAAGTTGCATCCTAGCCTCT
TTTGCCACACCATCTTAACTGTCCATCATTTCATATAGTTCACCATGTCT
CCACTTTCCTCCTGTTTTGTGTCCCATAGTTTCAGTAACCTGTGCTCAAC
CCCAGTCTAAAACTATTAAATAGAACATCACAGGAATGAAAATTCAAAAC
ATTTAAATTGTGCACACTCTTCTGATTAATTTGGTAAAATTTTACACGGC
CCTGTTCACTTTTATGCACCCCCCCCCCACTATCTTCTTTGATTCCATAT
GTAGCTACACTGTGTCACACACCTATCCATTATGCACCTAGTAAATGTGG
TCTATATNTCTCTACTGTTGTTATAAAATCCCATGACCTACGATCCTATC
ATGAGCTCATTTATGCTCTCCGCTACAGATTGACTCGCAGTTTTTCTTAC
TTGAAACTTGGTCTGTGTATTCTTAATATGGAGTTTTGAGATTGATGCCT
TCAGTTTTCCTCCGTTCTTGTATCCCTACTGTTTATACTTTCCTGAATGA
GTGTTATTGTCCTAAACCCCGCCGCATGATGCCCTTATGATGTTGCTTTT
CCCTCATCCATGTC
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCGGGCTTTGTGTATGTTAGGACACCACTG
TATTAGTTGAGCTACATTTCTAGCCATTGAGGGAAAGTACTAATGGTCTC
ATAGTCATTTTGTTCTTTCCCACTGGATTTTATTTATTTAATCTTTGAGC
ATTTGTGTACTTATTCTGTAGTGAACAAGGGCCAAAAGAAGTGAACAAAA
CCAATGAATCCTCTTTTAAAACCTGGAAATAATTTGTTTTTAGTTCCAGA
ACGTCTTTCCATAGGGCAGAGGGAATGATTTGGAGATGGGATCATCTAGC
CTAACCTATGTGTTGAAGTTTCAGGCCACTGAAAACCTAACATATAGCAC
TAGAGGAATGATACTCGTGGTTGTTCCACTTATCTCTACACATACATAGA
CATGTGCATATCTACACCTGCACATACATGTAACCACATGTATATGCACC
CTCATATATGTGAACACATGCACACACCCATCTACAATGGAGTCTTCTCC
TAGTGTTAAAATTGAATTTGTTGAAGTATCTTCTTTGGTCAGCGGTGAGA
TGTGAAATTACCATAAATAATGAACATGTATATCTATTCTTGCTCCCTAT
TTTAGAGTTTCTGACTTAATTCTCTCCCCCTGAGTGTTGGGATCCCTTTC
ACTGAAAGCTTGCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_l20.b1 MSMg01no121_l20.b1 CHROMAT_FILE:
MSMg01no121_l20.b1 PHD_FILE: MSMg01no121_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:37 2005
         (203 letters)



>mm_chrX_163978468_163979070
          Length = 603

 Score =  362 bits (187), Expect = e-104
 Identities = 199/203 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattgctctattaacatgagcatgttcaagtttgttcactacaacctctacttctggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atattgctctattaacatgagcatgttcaagtttgttcactacaacctctacttctggaa 344

                                                                       
Query: 61  taagttgcatcctagcctcttttgccacaccatcttaactgtccatcatttcatatagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 taagttgcatcctagcctcttttgccacaccatcttaactgtccatcatttcatatagtt 284

                                                                       
Query: 121 caccatgtctccactttcctcctgttttgtgtcccatagtttcagtaacctgtgctcaac 180
           ||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||
Sbjct: 283 caccatgtctccactttcctcctgttttgtgccccatagtttcagttacctatactcaac 224

                                  
Query: 181 cccagtctaaaactattaaatag 203
           |||||||||||||||||||||||
Sbjct: 223 cccagtctaaaactattaaatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no121_l20.g1 MSMg01no121_l20.g1 CHROMAT_FILE:
MSMg01no121_l20.g1 PHD_FILE: MSMg01no121_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:37 2005
         (291 letters)



>mm_chrX_163856082_163856772
          Length = 691

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   gggctttgtgtatgttaggacaccactgtattagttgagctacatttctagccattgagg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gggctttgtgtatgttaggacaccactgtattagttgagctacatttctagccattgagg 261

                                                                       
Query: 62  gaaagtactaatggtctcatagtcattttgttctttcccactggattttatttatttaat 121
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 262 gaaagtactaatggtctcatagtcattttgttcttacccactggattttattgatttaat 321

                                                                       
Query: 122 ctttgagcatttgtgtacttattctgtagtgaacaagggccaaaagaagtgaacaaaacc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctttgagcatttgtgtacttattctgtagtgaacaagggccaaaagaagtgaacaaaacc 381

                                                                       
Query: 182 aatgaatcctcttttaaaacctggaaataatttgtttttagttccagaacgtctttccat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aatgaatcctcttttaaaacctggaaataatttgtttttagttccagaacgtctttccat 441

                                                             
Query: 242 agggcagagggaatgatttggagatgggatcatctagcctaacctatgtg 291
           ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agggcagaggggatgatttggagatgggatcatctagcctaacctatgtg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)