BAC Information

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BAC

Clone NameMSMg01-122E07
ChromosomeX (Build37)
Map Location 114,716,964 - 114,717,661
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624153, LOC100039300, EG665045, LOC100039319, LOC624284
Downstream geneLOC665066, EG624388, ENSMUSG00000072994, LOC100039551, Tgifx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122E07.T7 (MSMg01no122_e07.b1)MSMg01-122E07.TJ (MSMg01no122_e07.g1)
ACCAG332173AG332174
length9891,038
length of high quality
(start - end)
603 (107 - 709)701 (128 - 828)
definitionCHROMAT_FILE: MSMg01no122_e07.b1 PHD_FILE: MSMg01no122_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:32 2005CHROMAT_FILE: MSMg01no122_e07.g1 PHD_FILE: MSMg01no122_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTG
TTTAGCTATGCTTTAAAGTTTTATTCGGGGTATTTGGTCTTTTTCTGTCC
CATTTCTTCAGCTTAATATATATTTTGGATATTAACCCTCTGTAAGTCTA
GGGTTATTGAAGAAATGTTCCCAATCTGTAGGCTGCCATTTTGCCCTGTT
TATAGTGTCCTTTTCCTTCCAGAAGTGTTTCAGTTTCATGAGGTCCCATT
TATCAATTCTTGATCTTAGGGCCTGAACAATTGGTATTCTGTTCAGGAAA
TTTTCTCCTGTTCTAATCCATTCAAGGCTATTTCCCACTTTCTCTTTTAT
TTGGCTTAGTATATGTGGTTTTATGCTTAGGTTCTTCATCCATGTGGAAT
TAAGTTTTGTGCAGTGTGATAAGTAGAGACATATTTTCATTCTTTTACCT
GTAGACATCCAGTTAGTCCAGCACCATTTGTTGAAGAATTAATTTCGTTT
TTTTTTTTTTTCACTGCATGGTTTTGGCTTCTTTATCAAAAATCAACTAT
CCATAGATTTGTTGGTTTATTTTTGGATCACTGATTCATTTCCATTGATA
AACATGTCTGTTTCTATACTAATGTCATGCAGTTTTTATCCCCATTGCTC
TGTATTGGGGATTGAGTACAGTGATGGTGATTCCTCCAGAGGTTTTTTTA
TTCCTGAGAATCGTTATTACTCCCCTGGGTTTCTGTTTTTCCGTACAAAG
AAAAGAATTGCTCCTTCAACATTTGTAAAAAAATAATTGCATTTGTATTT
TTTGCTGGTGAATTACATTTAAATTCTGGAAAATTGCTTTTTATAAAAAA
TGGCCCTTTACCTTTTATGTTTAAATTTCTTAATCAATCCTCAATTAACC
CCAAATTAGGAAAAATCCTTTTCTCCATCTTCTCTGAAAATATCTTTTCC
CCCCAAGGTTTTCCTTTTCCCCTTGGGGAAAATCATTAA
CCATTCTTTTNNNTTAGAGGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCATATAAGAGCTGAGGAATACTGAA
TGGCTGAGAAGCACCTCCTTAAAAGGTCAGTATCCTTAATCATTAGAGAA
ATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCCCTCAGAATGGC
TAAGATCAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACATACTCTAT
ATTCAAATAACACTGAAAAGTAAAAAGAAACTTTAAAGCATAGAGCAAAT
ATATTTTAACAGAAAACAATTTTATAAGTTTCACTGGTCAAAGAAAATAT
TTACTCTTATGGAGGTGCAAAAGTTGCTTCTTAAAAAGTATACTATTATT
TGATATAGCAAAGATTATGTGACTCTTTGATAATATGTTTTAAAGTATCT
TTATATTTTGATATTAGCAAATGATTCTTGATTTTTTTTCATGGAAGTAT
TGCTAGCTTCAGAGTTAGTGTACTTTCTATAACCACTTGGCAAATATTTT
CTTATTTCAATCAAGTTTAGAATTAAATGAAACAAATTATTTTTCTATTA
CTGTCATATATCAAGAATAAAGTGCAGAGAATTGGCTCTTGCAACATATG
AGAACATATTTGAATAGTTCATTCTGGCAACCACAATTAGGCAAGTACAT
TGAGCGTGTAGGTGAAGATGTTGAGTATTCTGTTGTGAGAAAAAAAGATG
AGGAAAATATGTGAATTGTGGTCAAATTTTGAAAGGTTTCTTAAGTACAG
AATGGCAATTCATATGTAACAGTTTTTACAAATCTAAGAAAAGGGTATGT
GAGTGAATTTTTGAAAAAAGGGAGGGATTTTCCTTTTCATGAGAATTATT
TTTTTGAAACTGTTTGGCCCACCCCAAGATTTACTCAGGAATGGCTTTTA
TGTGAACACTGGACTTTCCATGGGGAATTTTGAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_e07.g1 MSMg01no122_e07.g1 CHROMAT_FILE:
MSMg01no122_e07.g1 PHD_FILE: MSMg01no122_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:32 2005
         (701 letters)



>mm_chrX_114716761_114717861
          Length = 1101

 Score = 1272 bits (658), Expect = 0.0
 Identities = 688/698 (98%), Gaps = 1/698 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccttaatcattagagaaatgcaaatcaaaacaaccctgagattccatctcacacccct 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 204 atccttaatcattagagaaatgcaaatcaaaacaaccctgagattccatctcacaccagt 263

                                                                       
Query: 65  cagaatggctaagatcaaaa-ttcaggtgacagcagatgctggcaaggatgtggagaaag 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagaatggctaagatcaaaaattcaggtgacagcagatgctggcaaggatgtggagaaag 323

                                                                       
Query: 124 aggaacactcctccattgttggtgggattgcaagcttgtacatactctatattcaaataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggaacactcctccattgttggtgggattgcaagcttgtacatactctatattcaaataa 383

                                                                       
Query: 184 cactgaaaagtaaaaagaaactttaaagcatagagcaaatatattttaacagaaaacaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cactgaaaagtaaaaagaaactttaaagcatagagcaaatatattttaacagaaaacaat 443

                                                                       
Query: 244 tttataagtttcactggtcaaagaaaatatttactcttatggaggtgcaaaagttgcttc 303
           |||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 444 tttatacgtttcactggtcaaagaaaatagaaactcttatggaggtgcaaaagttgcttc 503

                                                                       
Query: 304 ttaaaaagtatactattatttgatatagcaaagattatgtgactctttgataatatgttt 363
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaaaaagtatgctactatttgatatagcaaagattatgtgactctttgataatatgttt 563

                                                                       
Query: 364 taaagtatctttatattttgatattagcaaatgattcttgattttttttcatggaagtat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taaagtatctttatattttgatattagcaaatgattcttgattttttttcatggaagtat 623

                                                                       
Query: 424 tgctagcttcagagttagtgtactttctataaccacttggcaaatattttcttatttcaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgctagcttcagagttagtgtactttctataaccacttggcaaatattttcttatttcaa 683

                                                                       
Query: 484 tcaagtttagaattaaatgaaacaaattatttttctattactgtcatatatcaagaataa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcaagtttagaattaaatgaaacaaattatttttctattactgtcatatatcaagaataa 743

                                                                       
Query: 544 agtgcagagaattggctcttgcaacatatgagaacatatttgaatagttcattctggcaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtgcagagaattggctcttgcaacatatgagaacatatttgaatagttcattctggcaa 803

                                                                       
Query: 604 ccacaattaggcaagtacattgagcgtgtaggtgaagatgttgagtattctgttgtgaga 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccacaattaggcaagtacattgagcgtgtaggtgaagatgttgagtattctgttgtgaga 863

                                                 
Query: 664 aaaaaagatgaggaaaatatgtgaattgtggtcaaatt 701
           ||||||||| ||||||||||||||||||||||||||||
Sbjct: 864 aaaaaagataaggaaaatatgtgaattgtggtcaaatt 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)