BAC Information

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BAC

Clone NameMSMg01-122F15
ChromosomeX (Build37)
Map Location 113,542,285 - 113,542,596
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623913, LOC546363, LOC100039277
Downstream geneCpxcr1, EG624153, LOC100039300, EG665045, LOC100039319
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122F15.T7 (MSMg01no122_f15.b1)MSMg01-122F15.TJ (MSMg01no122_f15.g1)
ACCAG332236AG332237
length1,1151,108
length of high quality
(start - end)
336 (467 - 802)313 (461 - 773)
definitionCHROMAT_FILE: MSMg01no122_f15.b1 PHD_FILE: MSMg01no122_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:42 2005CHROMAT_FILE: MSMg01no122_f15.g1 PHD_FILE: MSMg01no122_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAATACTANNNNNGAGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTCACCTGAGGAATACCGATTGGTTGAGAAGCACCTGAA
AAAATGCTCAACATCCTCACTTCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACTTCACACCAGTCAGAATGGCTAAGATCACCCATTCAGG
TGACAGCAGATGGTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATCGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGG
TTTCTCAGAAAACTGAACATAGTACTACCAGAGGATCAAGCAATACCTCT
ACTGAGCATATATCCAGAAGATGTTACAACTGGTAAGAAGGACACATGCT
CCAATATGTTCATAAGAGCCTTATTTATAATAGCCAGAATCTGGAAAGAA
CCCATAAATCCCTCCACAGAGGAATGAATACAGAAAAATGGTACATTTAC
ACAATGGAGTACTATTCAGCTATTAAAAATAATGAATTTATGAAATTCCT
AGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAATCCAAT
CCCAAAAGAACTCACATAATATGTACTCACTGATAAGTGGATATTAGTCC
AGAAACGTAGAATACTCAAGATAGAAGATACAATTTGTAAAACACATGAA
ACTCAAGAAGGAAGAAGACCAAATTGTGGACACTTTGTCCCTTCGTATAA
TTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCT
GAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCGGGGATCCATCC
CATAATCAGCTTCCAAACCCTGACACCATTGCATAACGTAACAATATTTT
GCTGTAAGGACCCCGATATAGCTGTCTCCTGGTGAGACTATGCTGTGGGC
CCAGGCTCTCAATTCCTAAAACTGTTATCCTTCTCCCAACATAGATCCCC
TGTAACCTTTGATTTGGAAAAGAATTTGATATAACATCATTCCCCTTTTT
TTGGGGCCAAAAAGGTCTTCCTAAGGGTTTTCCTTCGTGCCCTATTGCCA
CATTTGGTTTAACAC
CATATAATANNNNATTCAATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATATGTAAAATTTTATTT
GCCATATACAATTCTCCTCTCAAAGGCTCACTGCTGAATAAACTCTCACT
TTCTAGTTCTTTCTGAACTCTCTCTACCTGATTTGACTCATCTGTTCTGG
CTCAAAATTTCTCTCCAAGCTGACTTTCAACTTGAGAGGTTTCTCTCAAC
CTCTGACTGAATTGCTCTGCTTGTTCTCAAATTGACTTTGGCAATCTATT
CTAATCTTCTGGCTCCTATTCCTTCTCTGGCTTGTTCAAGCTTCATTTGC
AACTTGTCTCTGTAACTGTCTAGGAGAACTGCTTCCCCTCTCTCTTTTTG
ACCTGCAGTGCTTATTGAAGTTGCCTCTCTTTCCTGTCTATTCTCATATG
ATTTAGGCGCATCCTTTCTCTGACTCATTACTTTGATAACCTCAATTAGT
TGTCACATACAAACATCACTTTTTTCCTTCTACTATCTAACTTTACCTTC
ATTTTGGGGGACTAAAATTATAAAAAGGGAATGTCTATATTCTAGTCAGA
TCACAAAGACCAAGGTCTTTAGATATCCATTGCCAGAGCAGCCATGTTGC
TGGATTAAAATTCCACTACAAATATCCCTCCCTTAATAGGCTACTTTTAA
ATTTTGGTGCTAATTTGACTTGCATTATATAACTAAGTATTTATCCTAAA
TGGAACATAAGGCATCATTTTCTGAAGAAATTAGGCTAGTTTTAGAGAAA
CGTTTTGTAAAATTCCTTTAAATTCCACCCTCCCCCTAAAGAAAGAGATG
AAAAATAGAGTAATACAAAGATATTGTATGTAAAAAGAATAGAGGGGGAA
AATACTTTTGTGATAGAAGGAAGAAAAAGGAACCCCCCAAAAACTCAATG
CCCGTCCCTCAGAAGTTACATGGCTCTTCCCATGTTACCCCAAAAGTCCC
AATTACATTTTCTCCATGCCAATGGAAATTATTTTAACCTCCATTTTAAC
AATTTTTTCCATTTTTTCCCCAAAAAAAAAAAGCCTCCTATAATAACCCT
GGAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_f15.g1 MSMg01no122_f15.g1 CHROMAT_FILE:
MSMg01no122_f15.g1 PHD_FILE: MSMg01no122_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:43 2005
         (313 letters)



>mm_chrX_113542084_113542796
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%), Gaps = 1/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcctttctctgactcattactttgataacctcaattagttgtcacatacaaacatcact 60
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 202 atcctttctctgactcattactttgtttacctcaattagttgtcacatacaaacatcact 261

                                                                       
Query: 61  tttttccttctactatctaactttaccttcattttgggggactaaaattataaaaaggga 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttt-ccttctactatctaactttaccttcattttgggggactaaaattataaaaaggga 320

                                                                       
Query: 121 atgtctatattctagtcagatcacaaagaccaaggtctttagatatccattgccagagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtctatattctagtcagatcacaaagaccaaggtctttagatatccattgccagagca 380

                                                                       
Query: 181 gccatgttgctggattaaaattccactacaaatatccctcccttaataggctacttttaa 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gccatgttgctggattaaaattccactacaaatatgcctcccttaataggctacttttaa 440

                                                                       
Query: 241 attttggtgctaatttgacttgcattatataactaagtatttatcctaaatggaacataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttggtgctaatttgacttgcattatataactaagtatttatcctaaatggaacataa 500

                        
Query: 301 ggcatcattttct 313
           |||||||||||||
Sbjct: 501 ggcatcattttct 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)