BAC Information

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BAC

Clone NameMSMg01-122G21
ChromosomeX (Build37)
Map Location 65,887,297 - 65,887,817
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194, EG236844, LOC385372, LOC627888, LOC434788
Downstream geneFmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255, Aff2, EG666577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122G21.T7 (MSMg01no122_g21.b1)MSMg01-122G21.TJ (MSMg01no122_g21.g1)
ACCAG332295AG332296
length1,0171,005
length of high quality
(start - end)
659 (85 - 743)686 (75 - 760)
definitionCHROMAT_FILE: MSMg01no122_g21.b1 PHD_FILE: MSMg01no122_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:52 2005CHROMAT_FILE: MSMg01no122_g21.g1 PHD_FILE: MSMg01no122_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCCATTNTNNNAGCTATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTACCCGAGGAATACCCCTTAAAAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTCCTCATCAGAGAAATGCATATCAAAACAACCCTGA
GATTCCATCTCACACCAGTCAGAAGGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGTCGAGGATTTGGAGAAAGAAGAACATTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCATTCTGGTGGTTGC
TCAGAAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGTCCCAACGGGTAAGAAGGACACATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGG
GGAATGGATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAG
CTATTAAAAAGAAGGAATTTGTGAAATTCCTAGGCAAATGGTTGGACCTG
GAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACACGA
TATATACTCACTGATAAGTGTATATTAGTCCAGAAACTTAGAATACCCAA
GATATAAGATACAATTTGCAAATCACAGGAAACTCAAGAAGAATGAAGAC
CAAAGTGTGGACACTTTGCCCCTTTTTAGAATTGGAAACAATCACCCATG
GAAGGAGTTACAGAGACCAAGTTTGGAGCTGAGAAAAAAGGATGGACCAT
CTAGAAACTGCCATATCCAGGGATCCATCCCCATAATCAGTTTTCCAAAC
GCCTGACACCCATTGCCATTTCACTAACCAAGAATTTTTACTTGAAAAAG
GAACCCCGGAATATTAGCCTTGTCCTTCCTTGGTGGAAGACCTATTGTCC
CAAGGGGGCCCCTTAAGNCCAAAACCAACCAAAAATTGTTTGGTGAATGG
GCCTTCCAACCAAGGTA
CATATTTTNNNAATACAAGGNAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTAATTGGCCTACTTGTCATTCCT
TGTGGTAGCACCCCCTTATTTCTATGATTTCCCAATTGATATTGATTTCT
AAAAGGGAAAATTATAATGGTTGTGAGCCAGATTCTTTGGAAAATGATTT
TCACTAGTTGATGCTTGCTCCTGAAGATGGATGGACTAGAAGGATAGTAT
TTAATTTGGTTTGATTCCCAAATTATCCCTTTGGGAAAGCACTCACTTAT
CCTACAGGCAAAAGTATCAATGCTTTAATTGTGTTAATTCTAGTAATTTT
GGCAATTAATAAATCATAAATAATTTGAGTTCCAGCACAGTCTGTTTTAT
TAATTCATTTGTATATTTATTCTTTCTTCTTTTATTAATTTATCAAATTT
TATTAGTCTTATCCTATATACATAGTACAGTATTATAAAATAGATACTAT
AATTAAATATATGTATTATCCATATAATATTGATAACTATACAGTGGTAA
AGGTAACATCTACATAATACATAATTTTTGCATGTATATAGTATTTGTTA
TTTTTAATTTTAGTTCTGTATAATGATGATTATGTAATTGAATGAGATGA
ATAAAAAACAGATATACTTTATTTAAAAAATTCCTAAGTGTTTTTTTAGC
AGCCTGTGCTAAGGTGACACATGTTTTGCTAAATGGACTACTGTTAAAAT
AAAATACCTAAAAATGTGTAGGCAACTTGGGAATGGCACAGAGAGTAGAG
AGCAGCAGGGGTTTTGTTGTTGTTTCTATATTTTTATTTTTATTTTTTAT
TGGACATTTTATGCATTTATACTTTCATATTTCAGTGTTATCCCCCTCTT
CCTGGTTTCCCCCTCTGGAAACCCTTCCTTTGTCCCATCCCTTCCCCTTT
ATTTCTTTCTCCTCACTACAAATAACATTCCTGTGACCAAATAGGTTTTC
CCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_g21.g1 MSMg01no122_g21.g1 CHROMAT_FILE:
MSMg01no122_g21.g1 PHD_FILE: MSMg01no122_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:52 2005
         (686 letters)



>mm_chrX_65887297_65888382
          Length = 1086

 Score =  948 bits (490), Expect = 0.0
 Identities = 514/522 (98%), Gaps = 2/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   attggcctacttgtcattccttgtggtagcacc-cccttatttctatgatttcccaattg 64
           ||||||||||||||||||||||||||||||||| | |  |||||||||||||||||||||
Sbjct: 521 attggcctacttgtcattccttgtggtagcacctcac-aatttctatgatttcccaattg 463

                                                                       
Query: 65  atattgatttctaaaagggaaaattataatggttgtgagccagattctttggaaaatgat 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 462 atattgatttctaaaagggaaaattataatggttgtgagacagattctttggaaaatgat 403

                                                                       
Query: 125 tttcactagttgatgcttgctcctgaagatggatggactagaaggatagtatttaatttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tttcactagttgatgcttgctcctgaagatggatggactagaaggatagtatttaatttg 343

                                                                       
Query: 185 gtttgattcccaaattatccctttgggaaagcactcacttatcctacaggcaaaagtatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtttgattcccaaattatccctttgggaaagcactcacttatcctacaggcaaaagtatc 283

                                                                       
Query: 245 aatgctttaattgtgttaattctagtaattttggcaattaataaatcataaataatttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aatgctttaattgtgttaattctagtaattttggcaattaataaatcataaataatttga 223

                                                                       
Query: 305 gttccagcacagtctgttttattaattcatttgtatatttattctttcttcttttattaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gttccagcacagtctgttttattaattcatttgtatatttattctttcttcttttattaa 163

                                                                       
Query: 365 tttatcaaattttattagtcttatcctatatacatagtacagtattataaaatagatact 424
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tttatcaaattttattagttttatcctatatacatagtacagtattataaaatagatact 103

                                                                       
Query: 425 ataattaaatatatgtattatccatataatattgataactatacagtggtaaaggtaaca 484
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 102 ataattaaatatatgtattatctatataatattgataactatacagtggtaaaggtaaca 43

                                                     
Query: 485 tctacataatacataatttttgcatgtatatagtatttgtta 526
           | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  tgtacataatacataatttttgcatgtatatagtatttgtta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)