Query= MSMg01no122_l03.b1 MSMg01no122_l03.b1 CHROMAT_FILE:
MSMg01no122_l03.b1 PHD_FILE: MSMg01no122_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:27 2005
(757 letters)
>mm_chrX_152298519_152299674
Length = 1156
Score = 1286 bits (665), Expect = 0.0
Identities = 727/757 (96%), Gaps = 18/757 (2%)
Strand = Plus / Plus
Query: 1 atgaataaaatcactatcagttagacatcagctacgtttgcttaggaaaatgtatcattg 60
|||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct: 201 atgaataaaatcactatcagttagacatcagcta-gattgcttaggaaaatgtattattg 259
Query: 61 aggaggggagagagaatagaaatcacagtgggcaggtgctggggtgggattgggtctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aggaggggagagagaatagaaatcacagtgggcaggtgctggggtgggattgggtctctg 319
Query: 121 agacttacaggagacaaaaaataaaaaaaatcgtatcataactatagaagaaaaactctg 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 agacttacaggagacaaaaaataaaaaaaattgtatcataactatagaagaaaaactctg 379
Query: 181 aattagggtcactgaatatattaaggagaattttctggtgtatttccatttgtttttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aattagggtcactgaatatattaaggagaattttctggtgtatttccatttgtttttcat 439
Query: 241 aacaacaaagaaaatcaaatatccaaaggcaatcatcccttagatgtcatgttagtacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aacaacaaagaaaatcaaatatccaaaggcaatcatcccttagatgtcatgttagtacat 499
Query: 301 agtgacaatataaggattaactctgaatagtactcaccttattcatttaccattttctat 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 agtgacaatataaggattaactctgaatagtactcaccttactcatttaccattttctat 559
Query: 361 attatctttgagcaactgttcctttagggggaagtgtgtctacctgtgtgaatttgagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attatctttgagcaactgttcctttagggggaagtgtgtctacctgtgtgaatttgagtt 619
Query: 421 caccaaaaatatccctcagtattcaagctcttaatgtcttttttttcctctttctttctt 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 caccaaaaatatccctcagtattcaagctcttaatgtcttttttt-cctctttctttctt 678
Query: 481 tctttctttctttctttctttctttctttctttctttctttctttctttctttctttctt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tctttctttctttctttctttctttctttctttctttctttctttctttctttctttctc 738
Query: 541 tctttctttctttctttctttctttctctctctctctctctctctctctctctctctctc 600
||| ||| || ||||||||||||||||||||||||||||||| |||
Sbjct: 739 tctctct--ct--------------ctctctctctctctctctctctctctctctccctc 782
Query: 601 tctctctctctctctccctccctccctccctccctccctcccttccttccttccttcctt 660
||| ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 783 cctccctccctccctccctccctccctccctccctcccttccttccttccttccttcctt 842
Query: 661 ccttccttccttccaactgttccacattccatacctcctctcagcacccccactctccat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ccttccttccttccaactgttccacattccatacctcctctcagcacccccactctccat 902
Query: 721 gaggatgtccccactttccatgccctaccccaccaga 757
|||||||||||||||||||||||||||||||||||||
Sbjct: 903 gaggatgtccccactttccatgccctaccccaccaga 939
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 164
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 757
Length of database: 1156
Length adjustment: 10
Effective length of query: 747
Effective length of database: 1146
Effective search space: 856062
Effective search space used: 856062
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_l03.g1 MSMg01no122_l03.g1 CHROMAT_FILE:
MSMg01no122_l03.g1 PHD_FILE: MSMg01no122_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:27 2005
(813 letters)
>mm_chrX_152373411_152374623
Length = 1213
Score = 1313 bits (679), Expect = 0.0
Identities = 708/719 (98%), Gaps = 4/719 (0%)
Strand = Plus / Minus
Query: 7 cattttatggagaaaagataaaccctgaaaactttctacatataaaacatggccaaaact 66
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 717 cattttatggagaaaagataaaccctgaaaactttttacatataaaacatggccaaaact 658
Query: 67 aagtagtgaatcaatttttaaaatatttcaactgagagaccagtagtattaatattgcaa 126
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 657 aagtagtgaagcaatttttaaaatatttcaactgagagaccagtagtattaatatttcaa 598
Query: 127 tgtttttaattagaaaatatagtggttttatttataatagatttataatacctaaaacac 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tgtttttaattagaaaatatagtggttttatttataatagatttataatacctaaaacac 538
Query: 187 aaaatattacaaagtccctcacttattacagcaattatatgaactgtatgtaaatattag 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaaatattacaaagtccctcacttattacagcaattatatgaactgtatgtaaatattag 478
Query: 247 tatctattaggtaagcattaagtattataggaaacatgaatacacatataagaattcttt 306
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 477 tatctattaggtaagcattaagtactataggaaacatgaatacacatataagaattcttt 418
Query: 307 ctctcaagaaatttactatcctataggcaaaaacagtagcaaggctcaaacaaagtaact 366
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctctcaagaaatttactatcttataggcaaaaacagtagcaaggctcaaacaaagtaact 358
Query: 367 tacaaagaaagtttcagaaggtcatgtaacccatgggtatgcttcaatttcaagtaaaca 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tacaaagaaagtttcagaaggtcatgtaacccatgggtatgcttcaatttcaagtaaaca 298
Query: 427 tgttacttaattgccagactattggacttttgatgtgtactaaatatttcctggatctcc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgttacttaattgccagactattggacttttgatgtgtactaaatatttcctggatctcc 238
Query: 487 atctgaggtgtatgggtataaacaaacacacatgtatgtatatatgtacgtttgtatgta 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 atctgaggtgtatgggtataaacaaacacacatgtatgtatatatgtacgtttgtatgta 178
Query: 547 tgtatggatacatgaatgtggaagcaaataagcattggtattgacaatcacttcgagtac 606
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 177 tgtatggatacatgaatgtggaagcaaataagcattgctattgacaatcacttcgagtac 118
Query: 607 tatattgaataggtagggagaaagtga--agatccttgtccagttcctgattttagtggg 664
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 117 tatattgaataggtagggagaaagtgagcag--ccttgtccagtccctgattttagtggg 60
Query: 665 attgcttccagcttctctccatttagtttgatgttgggtactggtttgctgtagattgc 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 attgcttccagcttctctccatttagtttgatgttgggtactggtttgctgtagattgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 813
Length of database: 1213
Length adjustment: 10
Effective length of query: 803
Effective length of database: 1203
Effective search space: 966009
Effective search space used: 966009
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
