BAC Information

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BAC

Clone NameMSMg01-122M13
ChromosomeX (Build37)
Map Location 141,093,399 - 141,093,704
singlet/doubletsinglet
Overlap geneTrpc5
Upstream genePak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, LOC100039436
Downstream geneZcchc16, LOC666655, LOC623591, Lhfpl1, Amot, EG434860, LOC100039313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122M13.T7 (MSMg01no122_m13.b1)MSMg01-122M13.TJ (MSMg01no122_m13.g1)
ACCAG332552AG332553
length1,0201,046
length of high quality
(start - end)		316 (84 - 399)761 (86 - 846)
definitionCHROMAT_FILE: MSMg01no122_m13.b1 PHD_FILE: MSMg01no122_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:38 2005CHROMAT_FILE: MSMg01no122_m13.g1 PHD_FILE: MSMg01no122_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATTTATGTNNNNAGCAATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAAAATGTGTAGGACATTAAGAAATATGACAATAACTC
ATGAGGGAAAATAAACCCTTTCTATTGTTGGAATGATTGGTTCCTGGTTT
TAGACAGAACTAATTCAAACCTCTCAAAGACTTCCAGTTTGCAAACTCAT
TTTTGTGCATTAAGATGAAGAAAGAATGGCAGTGGCAATACTAGAAGAAC
CTGTTTTCTGGATTTTTTGTTTTGTCTTTATTCTCTTTCACTCTCCTTCT
GGATGTTCCATAATCCACTAGAACTCCTTGTCTTTCTCATATTAGCTTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTTTTN
NNNNNNNNTNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTTNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTT

NCCTAATTTTTNNNTAAGATGTGAGNCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTACAGCAAAGTAAAAA
AAACAATCAACTAAATGAACCAGAAAATCCACAGATGGGAGAGACTCTTT
GCCAGCTAGACACCTAAAAGAGGATTAATATCCAGAATATACAAAGAACT
CATAAAACAAAGTCTCAGGAAAACAAAGGCCCCACTTAAAAATAGGCTAC
AGATCTGAGCAGAGAGTTCTTAAAAGAAGAAATAAAATATAGCAAAGAAA
TCTCTCAAAAAGTCATAGTTCATAGCAATTAGGAAAATGCAAATTAAAAC
AACTTTAAGATTTCATCTCACACCAGTCAGAATGGCAAAGGTTAAGAAAG
CAGCTGATAACAAGTACTGGAGACAGTGTGGGAGAAAAGAAACCCCTATT
CCTATTGGTGGAATTGTGTAGCTACTTTGGAAACTTGTGTGCAGAATTTT
CAAAATGCTAAAGATACTTGTTCAGCCATGTTCCTTTCTGCTCTGTTTAC
AATAGCTAGGGAATGTAAGCTGCATCAATGTCTAACCAGTGATGAATGGA
CAACAAAAATGTGCACACTATTCATCTATGAAGAAAAATGAGATTCACAG
GTAAATGGATAGAACCAGAAAATATTATATTGAGGGAATAACCCAGACAC
AAACACTGCTTATTCTCTCATCTGTTTGCTCAGAAATTTGCAGAATTCTC
AAACTGCTAAAAATAAATTTACCATACGACCCAGCCATACCAGTCCTTGG
CATATGTCCAAAGGTTTCAACATCTTATTCTAAAGATCCTTGTCCTGCCA
TGTTTGCTCAGAAATGGCATGCGAAGTCTTACTGGCCCCAGATAATGGAA
GAAAGATGTTGAGTCTCCACTCAGCAAAAAGTAAAGGCGAACCCCCCAAA
CGTTTATCTGTCTTCCCGAAACATGGAAACTTGCTTTCAGCCAACAGTTA
AAAAAAATGTCCAAAAAAAAGGTTAGGGGGGACTAATTATTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_m13.b1 MSMg01no122_m13.b1 CHROMAT_FILE:
MSMg01no122_m13.b1 PHD_FILE: MSMg01no122_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:38 2005
         (316 letters)



>mm_chrX_141093242_141093958
          Length = 717

 Score =  530 bits (274), Expect = e-155
 Identities = 298/306 (97%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatatgacaataactcatgagggaaaataaaccctttctattgttggaatgattggttc 60
           ||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||
Sbjct: 463 aaatatgacaataactcatgagggaaaataaaatcattctattgttggaatgattggttc 404

                                                                       
Query: 61  ctggttttagacagaactaattcaaacctctcaaagacttccagtttgcaaactcatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctggttttagacagaactaattcaaacctctcaaagacttccagtttgcaaactcatttt 344

                                                                       
Query: 121 tgtgcattaagatgaagaaagaatggcagtggcaatactagaagaacctgttttctggat 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 343 tgtgcattaagatgaagaaagaatggcagttgcaatactagaagaacctgttttctggat 284

                                                                       
Query: 181 tttttg-ttttgtctttattctctttcactctccttctggatgttccataatccactaga 239
           |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 283 tttttgtttttgtctttattctctttcactttccttctggatgttccataatccactaga 224

                                                                       
Query: 240 actccttgtctttctcatattagcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 299
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 223 actccttgtctttctcatattagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 164

                 
Query: 300 gtgtgt 305
           ||||||
Sbjct: 163 gtgtgt 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space:   217356
Effective search space used:   217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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