BAC Information

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BAC

Clone NameMSMg01-123A13
ChromosomeX (Build37)
Map Location 37,131,789 - 37,132,097
singlet/doubletsinglet
Overlap genenone
Upstream gene6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik, LOC100039715
Downstream geneEG636756, EG636766, EG245391, LOC100039769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123A13.T7 (MSMg01no123_a13.b1)MSMg01-123A13.TJ (MSMg01no123_a13.g1)
ACCAG332743AG332744
length1,2501,234
length of high quality
(start - end)
309 (481 - 789)737 (91 - 827)
definitionCHROMAT_FILE: MSMg01no123_a13.b1 PHD_FILE: MSMg01no123_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:11 2005CHROMAT_FILE: MSMg01no123_a13.g1 PHD_FILE: MSMg01no123_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGTATTNNNNNNNCGACAGTGGGCGCTNXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCAACTGAGGAATACCCCCTGTAAGAGAAGCACCTAA
AAAAAAAAATGTTCAACATCCTCTTTTCTCAGGGAAATGCCAATCAAAAC
CACCCTGAGATTCCACCTTATACCAGTCAGAATGGTTAAGATCATAAATG
TGTCTGAAGTGAGAGAGCTGTTGGTTAACACCAAGGCATATGTGCTACTA
CTGCACACTTTTGGTTATTGTGCATTGTTGGTTATTACTACAGTTTGTAG
GCATCACAGTAGAATAGGACAGTTGGTTGCTAACTTCTTTGGAAGTTCAT
ATGTCACCTTTTGGCATTTTTAAAGGCAGTGTGTTTCTTTTGAAGTGGTT
GGCTGTTTAGAATATAAACCCAGTAACATAACATAAAAAAATAAATAAAA
TAGGAGAGTTTTCTATGATGAAATTTACAAAAAGTATATTATACTTTCAT
TTTCACTTTGATAGTACATATACTTATCATTGCATCTTAATATTTATCAG
TATTCCTGAACAGTATGACATAATGATGTTATGAAAATTCACAGCAACCT
TAGAATTTTGAAGATTTAGTCATGTTATCCTAACATCTAAAAAGAAATTT
TAGATAACTTGAAATTTCCTGGGTTAAATATATATATATTTAACTTTGAT
CTCATTACTTTAATGGCTTTACTGAACTCTAAATATATTTTGGCATGAAT
TTTTTGTCTCCCTTAATTTCAACTTGAAAGAAAAATACATATAAAATATA
AGGGACATAAATCATAAGATTTGATGCCATTTCATGGCCATATGTAAACT
GATGCAGTTTGGTTGTTCACTTACTTTGATAGTGCATATGCTTTGTATCT
TCTGCAATTATATGATTTCAGCAGGTACTTTTCAAGGGGTCTTTTATTCT
GTATGACAAGACTTTTAAAATAAATTTATTACCTTATACATTATTGGGCA
NCCTAACCCCTGTTCAGAAGTGCTTGTACCTGTCTCCCTCTTACATATTG
AAATTCTGGCAGTTATTTGAAACCTTTGTAAGCAAAATATTGGTATTTGG
AAAAAGTAAAGTTTCCAAATTTGTGGTCCCCTTTAATATAAAATCTTGTT
TTGACCTTTAAAAAGATAATCTGTTTTCTACCACTCTTTATCTTTGGGTA
GGATATAAAATCGGTGGAACTTCCCTCTTGCTGTTGTCTTTTATTTTTCC

CGATCTNNTNNNAAATCATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTAGCCCAAAATGAGTTGA
TCTACTAAATCCCTCCCCTTCGGGATCAGAGAACATTGCAGACTAAGAGG
CAAAATGGGTATAAGAACCAGAGGAGGTAGAGGACACCAAGAAAACAAAG
TCCTCTAAGTCAACATGAATAAAGCTTACAGGGATACACAGAGACTAAAC
AGCATGAGCAGGTTTGCATAAGATCCTCTGAATATATATTATGGCTTCTA
GTTTAGTGTTTTTATGGGATACCTGAATGTGTGAACAAGAAGGTCTCTGG
TTATTGTGCCTTTTCTTGGACCCCATGCTTCTGTTTTGTCTAATTCTGAT
GTGTTTATTTTGGTTATATCATATCATTTCATCCCTTAAAAGTCTGTTTT
CTAATGAGAGACAGATCTGGATACAAGAGAAGGCGAACTGGGAGATTCAG
AAAGGGATACTGGGATCAGGCTATATGATGTGAAAAAAAAAAAAACTATT
GTCAACAGAAAATGCCTCTGACCAATTGAAAAACATAAGAAATATGGCAG
ATGAGATGGCTCAGGAAACAGGCACTTTCTGCCAAGCCTGAATTCTATTC
CTGGAATCTATATTGTAGAATAAAGAGAATCAACCTCCAAAATTAAAAAG
GAAAACAATGGTTTAATAACATGGTATAATTTCTTTAAGTTATAAACTTC
ACAGGCTTCAGATTTATTTAAATATAATTAAATTTAATTGAAAATGAGCA
GCATGCAGTGATATGATATTTCAAATAACACTATTAAGTTTCCTTCTTTG
GAGAGAGTTTGGATGTGTGTTAATTTGTTTGTAGGATGTTTGCGACCTTA
AATACAACCCGTCTTTTGGTGGCTAATGCATTGCACTTGACTGTGTGCCT
TTATTTACAACCACCTGAGGACAATACGCCTTCTTGGTCTTGCCCTTATT
CTTGTGTCTTTTCTTCTCGTTATTTCCTTTTTCCCCCCCCTTCATTCTCT
CAGTCGTCCTTTTTTTTTCCTGGCCACTTCTTTCTTTCTTTTCTCTCCTC
TCTTTCCTTCCTCATTTCTCTGCACTGTTTCTCTTTTCCTCTTTTCCTCC
CCTCTCCCTTTCTCCTCTCCTTTCCTCTACATTTACTTTCCTCTAATTTA
TTTTCTAACATATTTTTCCCTTTTCTTACTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_a13.b1 MSMg01no123_a13.b1 CHROMAT_FILE:
MSMg01no123_a13.b1 PHD_FILE: MSMg01no123_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:11 2005
         (309 letters)



>mm_chrX_37131589_37132297
          Length = 709

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtatattatactttcattttcactttgatagtacatatacttatcattgcatcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagtatattatactttcattttcactttgatagtacatatacttatcattgcatcttaa 260

                                                                       
Query: 61  tatttatcagtattcctgaacagtatgacataatgatgttatgaaaattcacagcaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttatcagtattcctgaacagtatgacataatgatgttatgaaaattcacagcaacct 320

                                                                       
Query: 121 tagaattttgaagatttagtcatgttatcctaacatctaaaaagaaattttagataactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaattttgaagatttagtcatgttatcctaacatctaaaaagaaattttagataactt 380

                                                                       
Query: 181 gaaatttcctgggttaaatatatatatatttaactttgatctcattactttaatggcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatttcctgggttaaatatatatatatttaactttgatctcattactttaatggcttt 440

                                                                       
Query: 241 actgaactctaaatatattttggcatgaattttttgtctcccttaatttcaacttgaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgaactctaaatatattttggcatgaattttttgtctcccttaatttcaacttgaaag 500

                    
Query: 301 aaaaataca 309
           |||||||||
Sbjct: 501 aaaaataca 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)