MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-123P09
Chromosome	X (Build37)
Map Location	10,686,507 - 10,686,841
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Srpx, Rpgr, Otc, 4933416E14Rik, Tspan7, EG546265, LOC633354, LOC633361, LOC100042912, Mid1ip1, LOC668982, Ppia-psx_105.1
Downstream gene	LOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663, 8430439B09Rik, LOC669520, Rpl23a-ps, LOC100043945, Bcor
Link	Open Mouse BAC browser

Click to get alignment info.

name	Srpx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:51795 MGI:1858306
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpgr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19893 MGI:1344037
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Otc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18416 MGI:97448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933416E14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71180 MGI:1918430
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Tspan7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21912 MGI:1298407
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG546265 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546265 MGI:3647036
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 mRNAs, 779 ESTs, 6 Proteins

name	LOC633354 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:633354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins

name	LOC633361 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:633361
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 59 Proteins pseudo : _no_value

name	LOC100042912 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042912
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Mid1ip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68041 MGI:1915291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668982 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668982
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins pseudo : _no_value

name	Ppia-psx_105.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:547156
definition	note : peptidylprolyl isomerase A pseudogene x_105.1 pseudo : _no_value

name	LOC100042922 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042922
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042927 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042929 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042929
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042931 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	OTTMUSG00000016790 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:547160 MGI:3649617
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042939 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042939
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042943 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042944 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042944
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042946 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042946
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	EG236663 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236663 MGI:3643273
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	8430439B09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78147 MGI:1925397
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC669520 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669520
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Rpl23a-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC100043945 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043945
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein pseudo : _no_value

name	Bcor (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71458 MGI:1918708
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	Srpx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367987 GeneID:51795 MGI:1858306
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sushi-repeat-containing protein transcript_id : NM_016911.3

name	Rpgr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755347 GeneID:19893 MGI:1344037
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinitis pigmentosa GTPase regulator transcript_id : NM_011285.1

name	Otc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803523 GeneID:18416 MGI:97448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ornithine transcarbamylase transcript_id : NM_008769.3

name	Tspan7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84662760 GeneID:21912 MGI:1298407
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetraspanin 7 transcript_id : NM_019634.2

name	EG546265 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407006 GeneID:546265 MGI:3647036
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 mRNAs, 779 ESTs, 6 Proteins product : predicted gene, EG546265 transcript_id : XM_620954.3

name	LOC633354 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271039 GeneID:633354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins product : similar to lactate dehydrogenase 1, A chain transcript_id : XM_001481252.1

name	LOC100042912 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270966 GeneID:100042912
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100042912 transcript_id : XM_001476973.1

name	Mid1ip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801493 GeneID:68041 MGI:1915291
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish)) transcript_id : NM_026524.3

name	LOC100042922 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270968 GeneID:100042922
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001476992.1

name	LOC100042927 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270970 GeneID:100042927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : hypothetical protein LOC100042927 transcript_id : XM_001477006.1

name	LOC100042929 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270972 GeneID:100042929
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477023.1

name	LOC100042931 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270974 GeneID:100042931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477035.1

name	OTTMUSG00000016790 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125347343 GeneID:547160 MGI:3649617
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000016790 transcript_id : NM_001025260.2

name	LOC100042939 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270976 GeneID:100042939
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477063.1

name	LOC100042943 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270978 GeneID:100042943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477078.1

name	LOC100042944 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270980 GeneID:100042944
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477092.1

name	LOC100042946 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270982 GeneID:100042946
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477106.1

name	EG236663 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20983169 GeneID:236663 MGI:3643273
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : predicted gene, EG236663 transcript_id : XM_141620.1

name	8430439B09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270984 GeneID:78147 MGI:1925397
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 8430439B09 gene transcript_id : XM_001477135.1

name	LOC669520 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271041 GeneID:669520
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical LOC669520 transcript_id : XM_001481253.1

name	Bcor (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66792787 GeneID:71458 MGI:1918708
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl6 interacting corepressor transcript_id : NM_175045.2

name	Bcor (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351506 GeneID:71458 MGI:1918708
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl6 interacting corepressor transcript_id : NM_175046.2

name	Bcor (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365597 GeneID:71458 MGI:1918708
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl6 interacting corepressor transcript_id : NM_175044.2

name	Bcor (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142346423 GeneID:71458 MGI:1918708
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl6 interacting corepressor transcript_id : NM_029510.2

name	Srpx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8394362 CCDS:CCDS30013.1 GeneID:51795 MGI:1858306
definition	GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : sushi-repeat-containing protein, X chromosome product : sushi-repeat-containing protein, X-chromosome protein_id : NP_058607.1

name	Rpgr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755348 CCDS:CCDS30014.1 GeneID:19893 MGI:1344037
definition	GO_component : GO:0005929 - cilium [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0005507 - copper ion binding [Evidence IEA]; GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0042462 - eye photoreceptor cell development [Evidence IMP]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence ISS] [Evidence IMP] codon_start : 1 product : retinitis pigmentosa GTpase regulator protein_id : NP_035415.1

name	Otc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679184 CCDS:CCDS30015.1 GeneID:18416 MGI:97448
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0009348 - ornithine carbamoyltransferase complex [Evidence IEA] GO_function : GO:0016597 - amino acid binding [Evidence IEA]; GO:0016743 - carboxyl- and carbamoyltransferase activity [Evidence IEA]; GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008652 - amino acid biosynthesis [Evidence IEA]; GO:0006520 - amino acid metabolism [Evidence IEA]; GO:0006526 - arginine biosynthesis [Evidence IEA]; GO:0000050 - urea cycle [Evidence IEA] codon_start : 1 note : sparse fur product : ornithine transcarbamylase protein_id : NP_032795.1

name	Tspan7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84662761 CCDS:CCDS30016.1 GeneID:21912 MGI:1298407
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : transmembrane 4 superfamily member 2 product : tetraspanin 7 protein_id : NP_062608.2

name	EG546265 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82999865 GeneID:546265 MGI:3647036
definition	codon_start : 1 product : similar to Chain A, Crystal Structure Of Human Rangap1-Ubc9 protein_id : XP_620954.2

name	LOC633354 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271040 GeneID:633354
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481302.1

name	LOC100042912 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270967 GeneID:100042912
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477023.1

name	Mid1ip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386020 CCDS:CCDS30018.1 GeneID:68041 MGI:1915291
definition	GO_component : GO:0005874 - microtubule [Evidence IEA]; GO:0015630 - microtubule cytoskeleton [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007026 - negative regulation of microtubule depolymerization [Evidence IGI] codon_start : 1 product : Mid1 interacting protein protein_id : NP_080800.1

name	LOC100042922 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270969 GeneID:100042922
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477042.1

name	LOC100042927 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270971 GeneID:100042927
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477056.1

name	LOC100042929 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270973 GeneID:100042929
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477073.1

name	LOC100042931 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270975 GeneID:100042931
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477085.1

name	OTTMUSG00000016790 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70608196 GeneID:547160 MGI:3649617
definition	codon_start : 1 note : Novel protein similar to Histone H2A product : hypothetical protein LOC547160 protein_id : NP_001020431.1

name	LOC100042939 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270977 GeneID:100042939
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477113.1

name	LOC100042943 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270979 GeneID:100042943
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477128.1

name	LOC100042944 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270981 GeneID:100042944
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477142.1

name	LOC100042946 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270983 GeneID:100042946
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477156.1

name	EG236663 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20983170 GeneID:236663 MGI:3643273
definition	codon_start : 1 product : hypothetical protein protein_id : XP_141620.1

name	8430439B09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270985 GeneID:78147 MGI:1925397
definition	codon_start : 1 product : hypothetical protein LOC78147 protein_id : XP_001477185.1

name	LOC669520 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271042 GeneID:669520
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481303.1

name	Bcor (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41281849 CCDS:CCDS30022.1 GeneID:71458 MGI:1918708
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform d is encoded by transcript variant d; BCL-6 corepressor product : BCL-6 interacting corepressor isoform d protein_id : NP_778211.1

name	Bcor (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41281843 GeneID:71458 MGI:1918708
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant b; BCL-6 corepressor product : BCL-6 interacting corepressor isoform b protein_id : NP_778209.1

name	Bcor (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66792788 CCDS:CCDS30021.1 GeneID:71458 MGI:1918708
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant c; BCL-6 corepressor product : BCL-6 interacting corepressor isoform c protein_id : NP_778210.2

name	Bcor (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28144863 GeneID:71458 MGI:1918708
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant a; BCL-6 corepressor product : BCL-6 interacting corepressor isoform a protein_id : NP_083786.1

name	LOC633361 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:633361
definition	number : 2 pseudo : _no_value

name	LOC633361 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:633361
definition	number : 1 pseudo : _no_value

name	Rpl23a-ps (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:628338
definition	number : 1 pseudo : _no_value

name	4933416E14Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149270965 GeneID:71180 MGI:1918430
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 4933416E14 gene transcript_id : XR_032962.1

name	LOC668982 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:94407008 GeneID:668982
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins product : similar to High mobility group box 1 pseudo : _no_value transcript_id : XR_002281.1

name	LOC100043945 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271043 GeneID:100043945
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)-like pseudo : _no_value transcript_id : XR_035068.1

clone name	MSMg01-180A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541B03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-381P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352F23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-490N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271L08
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-123P09.T7 (MSMg01no123_p09.b1)	MSMg01-123P09.TJ (MSMg01no123_p09.g1)
ACC	AG333436	AG333437
length	1,184	1,240
length of high quality (start - end)	95 (336 - 430)	335 (131 - 465)
definition	CHROMAT_FILE: MSMg01no123_p09.b1 PHD_FILE: MSMg01no123_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:23 2005	CHROMAT_FILE: MSMg01no123_p09.g1 PHD_FILE: MSMg01no123_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:23 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TTCCTCCNNNGGGCATTGCGCGCTATAGACTCCTATAGGGAGAGGATCCG CGGAATTCTCATGAGTGCTAGAAGTCACCTTGGAGCTCACTGGCTTCTGT CCTGTGAAGATGGAGAACTTAACTTCTGTCCAAGGGACTGCAGTATACTG TCTCACCACTGAAGCCAAAGGCTCAACAAAATCATTATGAATGCTGTCTC TGCAGACTGGTTAGCAGTTTCTTAGGGAAACATGGTAAAAAGGTGATCGG GAGCCACTTAGGCAAGGTTTTCATACGTGTCTTCAGCCTCTGCTAAATGA ACTGTACCCTCAACAAAAGTAGTTCATGAACTTAGAGATGTTATGACTGT TTCCTCAACAGTCTCTCTTCTCCCAGCTCCCTCACTTGCTTTCAATCTAT CCCTTCTCTATCTTCCCCTACATTCTTTCAAGTCTCTGGCTGCCTGTTTT GAGGCTAACTTTTTTTTTTTCCCCCCAGGNTTTCTTCCGCCCCCCCCCAA AAAAAAAGGGGGGTTTGTTGTTGTTTTGGTTTTGCTTTTGGCTTGCCTTG CCCCTCCTCTCCCTCCCCTTCCCTCTCCCCTCCCCCCTCCTTTTCCTTCT CTCCCTTCCCCTCCCCCCCCCTCCTCCCCCCTCTCCCCTCCCCTCTTTCT CCTTTTCCCCTCCTTCTCCCCCCCCCCCCCTCCTCCCCCCTTCCCCTCCT CCCCCCCCTCCTTCCCCCCTCTCCCCCCCTCTCCCCTCTCCCTTCTTCCC CCTCCCCCTCCCCCCCTCCCCTCCTCCCTCCCCCGTCCCTCCTCCTCCCT CCCTCTCCCCTCTTCCCCTCCCCCTCCCCCTTTCCCACTCTCTCCCCCTC TCCCTTTTCCCTCCCTCCTTCCACTCCCTTTCTCCCTCTCTTCCTTCCCC CCCCCTCCTTCCTCCCCCTCCACTTCCTACTCTCTCCCTCCCTTCCCCCC TTTCTCTCCTCCTCCCTTCTACTCCCCTCTCCCACCTCTTCTCCCTCCCT TCCTTTCTTTCTCCCCACTCCTTCCTACTCCACCTCTCCTCTCCTCCCCC TTCCTCCTCCTTCCCCTCTCCCTTCCTCCCCCTCCCTTCCCTACCCCACA CCCTCTCTCTCTCCCTCCATTTCCCTCTCCCTCATCCCCATCTCTCCCTT CCACTCTTCACCCTCCCCTCATCTCCATTACTCC	ATATTACNNNNAAAGATGTGAGTCTGGGGCGCCXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCATTATCCATAGTGAAGTGG GAAATCACTGGCAGGTTTTTTGAAAGGACCTGGTTAATTATTCTGAAAGC TGCATGGAAATAGAAAGTAAATAGAAAGTGAAAGTGAAAGGAAGAGTGGA CAGGAACTGGAAAGGTAAGAGCAGTGGATGATCATGGCTATGTTTTCATC ATTACTCTTATTTTATAACAGATTATTAACCTAGTAATGAAGAATGCCTG TCATATCAGGACCATATCCTTCAGAGCAGTTGTAAGCTTATAGTATTAAG GTGCAGGCTTATTTCTATTCCAGAAATGTCTAGAACCTCAGCTAGAGGGA CTTAAATACTGTTAGAGACTGAGTCTGGAACTGGGATCACTTGCAGTTCT GCTATCTTATATGTTTTTAGCCTTAACTAACCTAACTAGAGTGCATATTT GAAACATGTCCATTGCTCCTGTGCTCCTTACAACATAGCAGCTCTCAGAG TAGTGTGACTTCTTCTTTTTAGAACTTTTGGAATTTATTACAACTTTCTC TGTAGGTTAATATCTTTGATTATTACAGTTTTGCTCGGTAATGACATCTC ATTCTTTCTTTACTTAGGTATTTATTTCACTTGCATTTCCAATGCTACCC CAAAAGTCCCCCCCATGCTCCCCCACCCACCCACTCCCATTTTCTTGTCC CTGGCCTTCCCCTGTTCTGAACTTTCGCCAGACCCATGGGCCCTCTCTTT CCCCCTGAAGGGCCGACCCCGGCCCTCCTTTTGACTTTATTTGCCTCTTA TATTCCCCTACTTCCTAACCGCCTCCTCCAATTAACCTGCCCTTCTTTAT TTGGGCCCCCTCAGTTCCTAATTTCACAACACCCCTTTACTCTATTTTCA ATCCCCTATTCCCCCAATTCCTCCACTCTCCTTCCCTGCTTCCTCCCCTG ACCCATTACTGTTCCCCTTCCGTGAATCTCCCTAAAAAACTCTTTCCCCC CTTTCTTTTCCCTTGATCTCCTAATCCTACCCCTTTGTCCTTTGGTAACC CTTCCCTCTTATTGCCTTCTCGCCCGCAGGTCCCCCTTCTCATTTTCCTC CGTCTTTCTTTTCCTTTATCTCCCCCCTCTCCTCTCTCTCTTCTCTTTCT CCTTACTTTCATATTCTTTCTCCCCTTGAGATCATATTCC
quality values	Open. Hide. 12 12 11 11 12 9 3 0 0 0 3 9 6 6 7 7 6 6 9 9 9 15 8 8 8 8 8 8 15 21 10 8 8 10 10 10 15 19 35 30 24 28 28 33 34 42 27 27 20 13 13 11 12 23 25 21 12 14 12 10 10 15 23 22 28 21 21 15 19 15 27 25 19 16 16 12 12 12 19 18 17 17 17 29 29 19 23 21 16 18 16 23 23 34 29 27 19 21 18 29 29 18 18 12 24 21 40 36 33 37 37 24 24 12 12 11 24 20 29 36 36 36 34 28 26 11 10 10 25 21 24 30 24 34 32 32 32 27 27 24 22 17 13 24 12 15 11 11 11 24 32 32 39 39 37 37 37 46 47 47 50 50 43 27 24 12 12 14 27 27 32 12 12 16 12 14 24 27 35 50 44 44 31 28 28 44 44 44 28 27 28 28 31 27 43 43 44 18 24 15 15 15 12 9 11 12 16 16 11 28 28 57 45 52 52 52 52 52 57 57 57 44 44 34 34 39 43 43 32 32 28 22 22 26 30 39 43 59 57 57 52 52 52 52 52 57 57 43 43 35 35 35 28 24 12 18 18 33 33 32 26 28 62 62 62 62 62 62 62 23 23 16 16 14 23 32 43 43 38 38 31 26 26 12 11 11 24 28 33 16 16 14 26 38 44 45 45 45 52 52 52 43 39 39 35 35 28 38 32 32 17 28 28 31 31 33 44 43 43 43 57 28 17 9 10 10 25 32 22 22 22 21 21 11 12 12 24 24 43 32 38 41 38 35 35 44 43 52 37 37 52 57 57 52 52 52 43 43 35 33 31 44 43 43 43 50 43 43 43 43 43 42 32 32 43 43 43 43 44 57 57 57 57 57 57 57 57 48 48 48 41 42 47 37 37 35 43 42 43 43 43 43 41 37 37 47 42 47 23 23 12 12 12 13 10 10 10 21 28 47 39 43 43 43 43 43 34 34 17 13 12 21 16 16 19 15 20 9 10 10 12 24 29 39 39 30 36 36 39 39 43 37 33 22 22 15 17 12 12 15 18 22 32 19 18 9 9 9 9 12 16 20 18 14 13 9 9 9 3 0 3 23 23 18 13 11 8 8 8 8 8 10 11 18 19 19 16 11 11 11 13 16 17 20 16 11 9 9 9 9 12 12 14 24 28 29 19 22 18 19 13 13 11 16 16 22 21 12 12 18 21 34 24 21 11 11 11 16 16 12 12 11 11 16 11 13 13 17 12 11 10 8 8 6 6 8 8 10 9 9 9 12 10 9 8 8 8 8 8 8 12 12 8 8 8 10 10 8 8 8 9 10 9 11 11 18 10 7 7 6 6 8 8 10 12 8 10 9 6 8 8 8 8 8 8 15 10 9 9 9 9 9 10 15 12 10 10 10 8 8 8 6 6 8 6 6 10 10 10 8 8 9 9 9 9 9 8 8 8 10 10 10 9 13 10 10 10 11 10 8 8 8 8 8 8 10 10 10 10 8 8 8 8 8 8 6 6 8 10 9 9 10 11 11 10 10 10 8 8 8 8 8 8 12 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 11 8 8 8 8 13 10 10 10 12 10 8 8 8 8 8 9 8 10 9 9 9 10 9 9 9 9 8 9 9 10 12 10 9 8 8 6 6 8 8 8 8 8 10 11 12 10 13 10 10 13 10 10 15 10 9 8 8 6 6 8 13 9 9 9 13 11 11 10 9 8 8 11 8 8 8 8 8 6 6 8 10 11 8 8 8 8 8 8 8 11 11 11 11 9 8 8 8 8 6 9 12 10 9 9 8 10 10 13 9 9 11 12 10 9 10 9 9 9 11 10 10 11 11 16 17 10 10 10 17 11 11 12 12 12 12 13 8 8 8 8 8 8 10 10 10 10 11 11 11 9 10 8 10 8 8 8 8 8 8 13 15 8 8 8 10 8 8 8 8 8 8 8 8 6 6 8 6 8 8 8 8 8 6 6 8 6 7 8 8 14 14 14 18 10 10 10 18 18 12 13 13 8 8 8 8 8 8 8 8 8 10 6 6 8 8 9 9 9 8 8 8 8 8 9 12 12 18 15 12 11 10 9 8 8 6 6 8 8 10 12 15 10 10 10 10 10 9 9 10 10 9 8 8 8 8 8 8 16 12 11 11 11 11 11 16 11 11 11 9 9 9 8 8 8 10 8 10 10 10 8 8 9 9 9 9 9 9 9 9 9 10 13 9 8 8 8 8 8 6 6 6 6 8 8 8 9 9 10 10 10 12 10 9 10 12 11 11 12 10 10 6 6 8 8 10 8 8 8 8 8 8 7 9 13 10 8 8 8 8 11 10 10 10 9 10 9 12 12 15 13 13 10 10 10 10 16 16 10 10 8 8 8 8 10 8 8 6 6 11 15 15 10 10 10 10 12 11 11 8 8 11 9 11 11 11 12 9 9 8 12 6 6 8 8 16 13 8 6 6 6 6 8 8 8 8 6 6 8 8 8 8 10 10 8 8 10 15 13 11 11 9 12 9 9 8 8 8 8 8 8 8 8 8 8 8 10 8 12 11 11 11 9 8 8 14 12 10 8 8 8 9 9 9 9 9 9 9 9 9 9 9 18 18 19 19 11 16 11 8 8 6 6 8 8 8 8 8 12 9 9 9 9 9 9	Open. Hide. 6 6 6 8 8 6 3 0 0 0 0 3 9 7 6 6 6 7 6 6 8 6 6 6 6 6 7 6 8 8 19 19 8 8 3 0 3 15 19 19 8 8 10 23 22 28 24 28 24 28 24 33 20 22 20 28 25 24 33 33 42 42 42 50 47 44 37 37 28 28 33 29 27 17 11 15 10 10 10 10 10 9 9 13 13 17 15 10 10 10 19 19 25 31 31 39 37 37 47 47 48 48 57 34 41 16 14 14 17 17 26 18 24 23 19 12 11 12 15 12 10 11 11 11 11 11 11 10 10 10 10 20 22 37 37 53 53 53 53 53 34 34 23 23 20 34 34 43 48 43 39 37 30 30 30 42 42 48 48 48 48 48 40 37 44 37 39 39 34 37 37 39 32 35 37 47 41 43 43 57 57 57 59 54 54 54 54 43 42 30 24 18 12 12 24 32 42 35 20 20 15 15 20 27 27 31 33 43 35 44 43 54 57 57 50 47 46 44 43 43 43 35 35 32 43 44 47 35 47 47 44 44 23 23 18 38 38 37 37 50 50 57 59 57 38 38 20 20 20 38 38 52 57 57 37 37 35 43 43 57 57 57 57 57 57 57 52 57 57 52 52 52 57 57 57 57 57 35 24 24 24 24 11 26 26 43 43 43 43 43 20 20 20 43 43 43 43 31 41 35 43 43 52 52 62 62 43 43 43 43 62 62 52 52 62 62 62 62 52 43 38 38 36 52 52 62 62 52 57 57 57 57 57 57 57 43 45 52 59 59 43 39 39 43 43 57 57 42 41 41 43 35 35 35 39 39 43 43 52 57 59 59 52 52 52 57 57 57 57 57 57 52 52 52 44 44 37 35 35 43 44 52 52 52 44 43 38 32 13 12 12 15 27 24 32 32 37 32 42 42 43 43 43 42 42 38 38 41 32 36 15 14 11 11 11 15 18 32 43 30 30 21 21 32 36 36 37 43 35 35 32 28 24 15 21 21 30 24 35 35 42 42 42 36 36 25 26 26 34 34 13 13 13 34 34 54 48 44 39 23 23 11 12 12 17 10 8 10 10 8 10 12 12 12 15 15 20 32 28 34 26 15 15 11 21 21 23 15 17 18 17 17 13 26 15 20 24 26 12 10 8 8 8 8 11 13 17 11 12 12 15 24 21 22 10 10 10 19 21 46 48 37 37 28 28 28 37 24 34 20 20 20 32 27 23 18 11 11 10 12 12 15 27 24 24 21 15 11 11 11 12 10 13 13 17 20 16 28 28 39 37 32 32 30 32 32 30 40 24 28 14 10 8 8 8 8 15 23 28 15 13 13 19 21 21 27 12 12 12 16 11 11 16 11 12 12 26 18 14 10 13 13 16 16 11 11 12 15 11 11 11 23 18 23 21 31 28 24 24 25 33 31 30 21 24 12 12 12 18 24 34 28 22 18 13 14 12 12 14 18 15 27 21 22 10 8 8 8 8 8 8 16 20 12 12 11 10 10 10 15 13 17 17 15 14 10 10 10 10 10 19 10 14 14 18 16 15 12 8 8 9 10 10 13 10 10 8 8 10 8 8 8 12 18 17 19 11 11 16 22 15 18 25 24 16 16 16 18 23 19 15 17 10 10 10 10 10 10 15 15 22 21 12 10 10 10 10 10 10 10 19 12 9 11 12 12 15 11 11 22 22 22 19 12 8 8 10 9 9 10 10 10 10 11 11 13 15 23 24 29 28 21 15 12 10 10 11 10 10 10 10 10 13 16 19 17 10 9 10 10 10 10 10 10 9 9 9 9 10 10 11 11 11 11 16 12 11 10 15 8 8 8 8 9 9 10 13 9 8 8 6 6 8 8 8 9 16 17 13 10 9 10 9 10 10 10 12 8 8 8 8 8 8 8 10 10 10 8 8 8 10 10 10 12 11 22 8 8 8 8 8 8 8 8 8 10 13 10 8 8 8 8 6 8 6 6 8 8 9 9 10 12 18 12 12 12 15 15 15 17 13 13 8 8 8 8 8 8 8 9 9 10 11 18 13 8 8 8 8 8 10 6 7 7 8 8 10 10 10 8 8 8 8 8 9 10 10 14 10 9 10 10 15 12 8 8 8 8 10 9 8 8 8 8 8 10 11 9 9 9 9 9 9 10 10 12 8 8 6 6 8 6 6 7 7 8 8 8 8 8 8 13 13 15 10 9 8 8 10 10 9 9 10 10 11 9 9 12 9 11 16 11 11 12 12 10 8 8 8 8 8 10 13 15 16 10 13 13 8 8 8 8 10 10 8 8 6 6 8 8 9 11 21 19 15 13 8 8 8 8 6 6 6 6 8 8 8 8 6 6 8 8 8 8 8 11 10 10 10 9 9 9 10 10 8 8 8 10 17 15 14 6 6 6 6 6 8 10 11 18 18 19 12 10 10 10 10 10 10 10 10 10 10 10 10 15 10 8 6 6 8 7 8 10 10 8 8 10 8 8 8 12 12 9 10 9 9 9 8 8 6 6 8 10 8 8 8 8 8 8 8 8 6 6 6 8 8 11 9 9 9 8 8 8 8 6 6 6 8 8 8 8 9 12 10 10 8 8 6 6 6 6 6 8 8 8 10 8 8 10 8 8 8 9 9 9 9 9 10 9 8 10 10 8 8 8 8 6 6 10 9 9 10 15 10 9 10 8 12 10 8 8 8 8 8 8 10 10 13 14 15 17 8 8 8 10 8 8 7 8 9 8 8 8 8 10 8 10 10 8 8 6 6 8 8 8 8 9 12 12 8 8 8 8 10 8 6 6 6 6 8 8 8 8 8 6 6 8 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no123_p09.g1 MSMg01no123_p09.g1 CHROMAT_FILE:
MSMg01no123_p09.g1 PHD_FILE: MSMg01no123_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:23 2005
         (335 letters)



>mm_chrX_10686307_10687041
          Length = 735

 Score =  625 bits (323), Expect = 0.0
 Identities = 332/335 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggttaattattctgaaagctgcatggaaatagaaagtaaatagaaagtgaaagtgaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggttaattattctgaaagctgcatggaaatagaaagtaaatagaaagtgaaagtgaaag 260

                                                                       
Query: 61  gaagagtggacaggaactggaaaggtaagagcagtggatgatcatggctatgttttcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagagtggacaggaactggaaaggtaagagcagtggatgatcatggctatgttttcatc 320

                                                                       
Query: 121 attactcttattttataacagattattaacctagtaatgaagaatgcctgtcatatcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attactcttattttataacagattattaacctagtaatgaagaatgcctgtcatatcagg 380

                                                                       
Query: 181 accatatccttcagagcagttgtaagcttatagtattaaggtgcaggcttatttctattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accatatccttcagagcagttgtaagcttatagtattaaggtgcaggcttatttctattc 440

                                                                       
Query: 241 cagaaatgtctagaacctcagctagagggacttaaatactgttagagactgagtctggaa 300
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 441 cagaaatgtctagaacctcagctagagggacttaaatactgggagagactgagtctggaa 500

                                              
Query: 301 ctgggatcacttgcagttctgctatcttatatgtt 335
           ||||||||||||||||||||| |||||||||||||
Sbjct: 501 ctgggatcacttgcagttctgttatcttatatgtt 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information