BAC Information

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BAC

Clone NameMSMg01-124D21
ChromosomeX (Build37)
Map Location 164,588,578 - 164,589,170
singlet/doubletsinglet
Overlap geneFrmpd4
Upstream geneTmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566, Msl31, Arhgap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124D21.T7 (MSMg01no124_d21.b1)MSMg01-124D21.TJ (MSMg01no124_d21.g1)
ACCAG333645AG333646
length1,1951,207
length of high quality
(start - end)
656 (76 - 731)595 (121 - 715)
definitionCHROMAT_FILE: MSMg01no124_d21.b1 PHD_FILE: MSMg01no124_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:04 2005CHROMAT_FILE: MSMg01no124_d21.g1 PHD_FILE: MSMg01no124_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATAACATTCGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTC
CTGATCTTTCAAGACCCTTATATGAAGGGGTACTGGATTTTGTCAAATGC
TTTCCCCTTATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGT
TTATATAGTGGATTACGTTGATGGATTTCCCTATATTAAACCATCCCTGC
ATCCCAGGGATGAAGCCTACTTGGTCATGATAGATGATTGTTTTGATGTG
TTCTTGGATTCAGTTTGCAAAGATTTTATTGAGTATTTTGCATTGATATT
CATAAGGGAAATTGGTCTGAAGTTCTCTTTCCTTGTTGGATCTTTGTGTG
ATTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAATTGGGTAGAATA
CCTTCTGTTTCTATTTTGTGGAATGGTTTAAGGAAAGTTGGAATTAGGTC
TTTTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCGGGGA
TATTTTTTGGTTGGGAGACTATTGATGACTGCTTCTATTTCTTTAGGTTA
AATGGGACTGTTTAGACCGTTAATCTGATACTGATTTAACTTTGGTATCT
GGTATCTGTCGAGGAAGTTGTCCATTTCATCCAGGTTTTCTAGTTTTGTT
GAGTATAGCCTTTTGTAGTAGGATCTGATGATGTTTTGGATTTCCTCAGG
TTCTGTTGTTATGTCTCCTTTTCAATTTCTGATTTTGTTGATTTGGATAC
TGTCCAGCTCTCTCCTGAGTCTCAGTGGTCAGAGTACTCTCTGCCAGCAA
GCTCTCCTCTTACAGGGAAGGTTTACAGAAGTCTGGTTGTTAGACCTGCC
CTACTGACTTAAGATGAAGGTTTGAAAACAGTCCCGTTCCCATAAAATGT
GTTGCCTTTGCAGTTCTGCTTTCTCACCTGGAAGAGCCTGGTCTCTTGAA
GGAACCCGGGACACCAGAAAGCTCCCCTCCCCTGTTTCCATCAGTCAAAG
CCCTTCCCAGGTGGAAACCCTTCTTTTTCGGCGGGTGGAAAGGTGCCCCA
AATGTTCTGTACCCTTGAAAAATAAATTCTGCTCCATAAAATCCTGTGTT
CCCATTCCTGATGAACGGGTTGGTCTCCCCCCTCTCTCAAACCCCCTAAA
AACTTTTCTTTTTTGTCAGCTCTGTTTCTCTCCAGTGAATCCTGG
TTTTTTATACATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTTAGGGGATAATTCTATTTAACTAGTAT
GTTTATGAGATCTTTATAAACTATAAGAATTGAAATTAAGAATGAGTAAG
TCCTTGGGTCAAAGAGAGTCAAGTAGGCTTCAGCTACAAGGTAGGTTTTG
ATATAAAATAAGGGTTTTTAGAGGTTGTTAATAACTAAAAACATATTTTT
GATTCCATATGATCAAAAATATACTACATAATTCTCCCTTTGCTAATTTT
TCTAGGGATTTTTATTGTGTTCTAGTAAAAATAATTTAAGCACTCATGAA
CAGCAACAAGAGAATAACCCAGATAAAATGGTGTAAAAAAATTAGGAAAA
CAGTATCAGGTAAAAAGAAGGAGAGAGGTTACTATTGCTCTCTAAGTTGA
TTGGAGTTAGGGTTGCAACACACACTTCCGGTGGCTCACAAAGTCCTGTA
ATGCCAACTCCAAGGGATCTAATATCGCCTTGTGGATTCTGCAGGGACAG
GGACATAAACGAATGTGGACATACACACAAAATAAAATAAATTTTAAAAA
AGTGTTTTTCAGTTAAAAAAATAAAATAAAAAGAGCATCAGACAGGGTGG
TACATGCATTTAATGGCAGTACTCTGTGGGTTTGAGAAGAATTTAAGGAG
ATCCACTGCTACACAGAGAGACCTCATCTCAAAAGAACCAAGAATTAATT
AACTAACTAATTAATTGAAAGTATGTGTGGTGACTGCTGTGATAAGGGGC
AAAAAGAAAGATAAAAGAACTTTAAAGGTTTTTTCAAAAACCTCTCAAAT
ATATGACAATAAATATTCTCAGATGCTACTTTTTTAAAAATGGATTTATT
TGCCCAGTTACCCCACGTGATATCCTAGGTATGCTATACCTTAAGGAGAA
TTTCTTTTTCAGTTTGGAATATCTAGGTACTTATGGGTACCTTGTGAGAA
TTGGAAAAGTCAAGCTAAAGGAATTGGCCCATAGCCAACTAGTGCCTAAC
AACATATACCGGTAGAGATTTGATTTAACAATTTAAAAACCCTTTGGCGT
TTCTTTTAAAAGAACCTAACTCTTAGTTCCTTGGGCTTTTTCCCATAACC
ATCCCACACAACTAATTGGTAAACCCTAAGGTCTCCAGGGGATAACTCTA
TTATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_d21.g1 MSMg01no124_d21.g1 CHROMAT_FILE:
MSMg01no124_d21.g1 PHD_FILE: MSMg01no124_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:05 2005
         (595 letters)



>mm_chrX_164588378_164589370
          Length = 993

 Score = 1108 bits (573), Expect = 0.0
 Identities = 589/595 (98%), Gaps = 2/595 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctataagaattgaaattaagaatgagtaagtccttgggtcaaagagagtcaagtaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctataagaattgaaattaagaatgagtaagtccttgggtcaaagagagtcaagtaggctt 260

                                                                       
Query: 61  cagctacaaggtaggttttgatataaaataagggtttttagaggttgttaataactaaaa 120
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggacaaggtaggttttgatataaaataagggtttttagaggttgttaataactaaaa 320

                                                                       
Query: 121 acatatttttgattccatatgatcaaaaatatactacataattctccctttgctaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatatttttgattccatatgatcaaaaatatactacataattctccctttgctaatttt 380

                                                                       
Query: 181 tctagggatttttattgtgttctagtaaaaataatttaagcactcatgaacagcaacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctagggatttttattgtgttctagtaaaaataatttaagcactcatgaacagcaacaag 440

                                                                       
Query: 241 agaataacccagataaaatggtgtaaaaaaattaggaaaacagtatcaggtaaaaagaag 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaataagccagataaaatggtgtaaaaaaattaggaaaacagtatcaggtaaaaagaag 500

                                                                       
Query: 301 gagagaggttactattgctctctaagttgattggagttagggttgcaacacacacttccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagagaggttactattgctctctaagttgattggagttagggttgcaacacacacttccg 560

                                                                       
Query: 361 gtggctcacaaagtcctgtaatgccaactccaagggatctaatatcgccttgtggattct 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 gtggctcacaaagtcctgtaatgccaactccaagggagctaatatcgccttgtggattct 620

                                                                       
Query: 421 gcagggacagggacataaacgaatgtggacatacacacaaaataaaataaattttaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagggacagggacataaacgaatgtggacatacacacaaaataaaataaattttaaaaa 680

                                                                       
Query: 481 agtgtttttcagttaaaaaaataaaataaaaagagcatcagacagggtggtacatgcatt 540
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgtttttcagttaaaaaaa--aaataaaaagagcatcagacagggtggtacatgcatt 738

                                                                  
Query: 541 taatggcagtactctgtgggtttgagaagaatttaaggagatccactgctacaca 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 taatggcagtactctgtgggtttgagaagaatttaaggagatccactgctacaca 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 993
Length adjustment: 10
Effective length of query: 585
Effective length of database: 983
Effective search space:   575055
Effective search space used:   575055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)