Query= MSMg01no124_j07.b1 MSMg01no124_j07.b1 CHROMAT_FILE:
MSMg01no124_j07.b1 PHD_FILE: MSMg01no124_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:52 2005
(589 letters)
>mm_chrX_135976883_135977871
Length = 989
Score = 1085 bits (561), Expect = 0.0
Identities = 582/589 (98%), Gaps = 2/589 (0%)
Strand = Plus / Plus
Query: 1 taggtatttggcaagtcattgtttggaggcacctatagcaaaacaatactgaaaggaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taggtatttggcaagtcattgtttggaggcacctatagcaaaacaatactgaaaggaagc 262
Query: 61 atacagattgtatgggatgccacagttccaggagactaagtttctgtgaaactcttcacc 120
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acacagatggtatgggatgccacagttccaggagactaagtttctgtgaaactcttcacc 322
Query: 121 ttgggactgcttccaggtttctaaacctgtcaagcaagtcactactggagtgaatgtagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgggactgcttccaggtttctaaacctgtcaagcaagtcactactggagtgaatgtagc 382
Query: 181 aaatctgataccctcttctggcctccacaggcacccacattttttgtgcatacacacaca 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 383 aaatctgataccctcttctggcctccacaggcacccaca-tttttgtgcatacacacaca 441
Query: 241 cattaatgaaaacaaaataaaaaaattaaaataaattgtgattcataatttcttagaaaa 300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 442 cattaatgaaaacaaaataaaaaaattaaaataaattgtgaagcataatttcttagaaaa 501
Query: 301 aaaaccgactataccatcaagcaggatagcatatattgtcatatagtcaccttttaggaa 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaaa-cgactataccatcaagcaggatagcatatattgtcatatagtcaccttttaggaa 560
Query: 361 gaatatctgaaatacatacagcaaattactactataaaaaacaggtattattaactctaa 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 gaatatctgaaatacatacagcaaattactactataaaaaacaggtgttattaactctaa 620
Query: 421 acatcatagagtacattaagatttacccatactttccataatgcagctttgtgccttttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatcatagagtacattaagatttacccatactttccataatgcagctttgtgccttttg 680
Query: 481 agatccatgtcctagtccctatatgggctcctgtaatcaatattccatattactttatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agatccatgtcctagtccctatatgggctcctgtaatcaatattccatattactttatat 740
Query: 541 attccttcacacattccagaagcaagtgatatcgatgcaaccttttctc 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attccttcacacattccagaagcaagtgatatcgatgcaaccttttctc 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_j07.g1 MSMg01no124_j07.g1 CHROMAT_FILE:
MSMg01no124_j07.g1 PHD_FILE: MSMg01no124_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:52 2005
(332 letters)
>mm_chrX_136086109_136086841
Length = 733
Score = 526 bits (272), Expect = e-154
Identities = 314/330 (95%), Gaps = 6/330 (1%)
Strand = Plus / Minus
Query: 1 gttacatggtgatttaatccacacatatggcctcgtggtgtatgcttttcactttttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gttacatggtgatttaatccacacatatggcctcgtggtgtatgcttttcactttttatg 374
Query: 61 ccccaaatactgtactaaagtccagggacttcatttgtttttgtttgtgcttca-ttttt 119
| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 373 ctacaaatactgtactaaagtccagggacttcatttgtttttgtttgtgtttcatttttt 314
Query: 120 tatttaattaaagcacacaacatgccaaagacaatcaaatgagccttagatgggatatat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tatttaattaaagcacacaacatgccaaagacaatcaaatgagccttagatgggatatat 254
Query: 180 aaaagctcaagcttcaatatctcaacagcctcctctgctagacatataaattaaaagggc 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaaagctcaagcttcaatatctcaacagcctcctctgctagacatataaattaaaaggga 194
Query: 240 tctgcaaccctataggtggaacaacaatatgaactaacctttaccccggagctcttgact 299
||||||||||||||||||||||||||||||| ||||||| |||||| || || ||
Sbjct: 193 tctgcaaccctataggtggaacaacaatatgtactaaccagtaccccc-ag----tgtct 139
Query: 300 ctagctgcatatgtatcagaagatggccta 329
|||||||||||||||||| |||||||||||
Sbjct: 138 ctagctgcatatgtatcaaaagatggccta 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 733
Length adjustment: 9
Effective length of query: 323
Effective length of database: 724
Effective search space: 233852
Effective search space used: 233852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
