BAC Information

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BAC

Clone NameMSMg01-124K18
ChromosomeX (Build37)
Map Location 4,768,238 - 4,768,576
singlet/doubletsinglet
Overlap geneLOC100043935
Upstream geneLOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724
Downstream geneLOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124K18.T7 (MSMg01no124_k18.b1)MSMg01-124K18.TJ (MSMg01no124_k18.g1)
ACCAG333966AG333967
length1,2301,236
length of high quality
(start - end)
339 (119 - 457)655 (118 - 772)
definitionCHROMAT_FILE: MSMg01no124_k18.b1 PHD_FILE: MSMg01no124_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:05 2005CHROMAT_FILE: MSMg01no124_k18.g1 PHD_FILE: MSMg01no124_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:05 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGGGNGGCGCACTGCGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAAACCTGAAGAGAGCCTATTGAGAAATTGTTCAGGAGATTGCAG
GTTCTCTCAGACCTTATACAAAGTGCTATGAATATGTGAGTGCAGCTTTG
CACAGAGGCCATTGTGCCTGTGAGTTCATGTTCCTGCTGAGGACAGATTG
CAATGGAGACAAAAGTGTAGGTGCCTGCTGATGTCTCGAGTTGAGGATTA
ACCTGTTAGTGCAGGTGACTGCAGGGGCCAGGGAAGGGACCTGGGCAAAT
AAGTGCAGGAGCCTTCAGAAGACTAGATTATGTGGGGACAGTGGGCTATA
CACAGACAAGCTGGTCTCCAGTTGAGTTGAGGTCTGAACTCTAGTAGAAC
CTGATGTTTGGCAATTCCCACCTACATGGGACAGAAGGCGTTCCCTCATG
TCTTCTGTTTTCCTCCCCCCCGTTGAATTTACCACCCCCACATCCAACAC
AAGAGAGGATAGTGGCTAGCAGTCATGTACACAATGTCCCAAGCTTCTGA
CCTTCAGGCTAGACTTCTCCCAGTTACCTAGCAACACCAAGTCAACAAGT
CCATTATAAGAGGGGCTACTTGGCCCACTCCTCACTCTCTTAAGCTTTTA
CTTTCTTTACTCTCCCTCTTACTCTCTCTCTCTTACTCTTTTAAGCTTTT
ACCTTCTTTAGTCTCTCTCTAAGCCTTCTCTCTCTAAGCCTTCACTTTTC
TTACTCTCTAACCCTCTTTCTCTCCTTCCTTTCCCCCTTCTCTCCCGTTG
GCCATGGCCAGTCTCTCCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTC
TCTCCCTCTTTCTCTTTCTTTTTATCCCCCTTCTCTCTCTTCTTTCTAAT
TCTTCTTTTTCTCTTCCCTCCCTTCTCTTTCTTATACCAATCTTTCTATC
CTCCCCTCCTTTCTCTGTTTTTTCCGCTCCCTTATCTCATACTTATCTCT
TGTGCTATATTTTTTCTTTCCTCTGCTTCTTTCTATATTTATTTCTTCAC
TTGCTTTTCTCTACTTTCTCTTATTTTCGTCTTACCTTTTTTTCTCTTCT
CTTTATCCTTTATCTTCTTCCTACTATTCTTTATCTGCCACTTATGTCTT
CTTCTTTTTCCACTCCTCCCTCCCTTTCTTCTTTATTCCCTTCTTCCTCA
ATCTAACACCTCACTTTTCACTTCTCAATA
CCCCATACCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTACAAGAGGAATCTCTACTAGTGGAGAAGC
ACTTTAACCTTTAACAACATTCTTATTAGTCATCAGGAGAATGCAAATCA
AAACAACTCTGAGATTCCATCTTAACACCTATCAGAATGGCTAAGATCTA
AACTCACTCGAGGATGTGGAGAAAGGGGAACATTCCTCCAGTGCTAGAGT
GGAAACTTGCACAACCACTTTGTAAATCAATTTGGTGGTTTCTTAGAAAA
TTGGGAATAGCTCTACCTCAAGACACAGCTGTACCACTCCTGGACATATA
CCCAAAGATCAAGTGTCCATAGTATGTGGATTTATTTCTGTGACTTTGAT
TCTATTCTGTTGATCAATCTGTCTATATTTATGTCAATATCTTGTGATTT
TTATTACTATTGCTCTGAAGTTTAGCTTACAATCAGGGATAGGGATACCA
CCAGAAATTATTTAATTATACAGGATTGTTTTAGCTACCCTGGGTTTTTT
GTTTTTCTATATGAAATTGAGAAATGCTCTTTCAAGGTCTGTAATGAATT
GTGTTGGAATTTTGATGTGCATTGCATTGAATCTGTAAATTGATTTTGAT
AAAATGACCATTCTTAGTATGTTACTCCTACCACTCCATGGACAAGGGAG
ATATTTCCATCCTAATATCTTCCTCAATTTCTTTCTTTAGAGACACAAAG
TTCTTGTCATACAGGACTTACACATCATATGTTAGAGTTACACCAAAATA
TTTTATATTTTTTTGTGACTATTGTGAAGAGTGTTGTTCACCTAAATTTC
TTTCTCAATTTACTTATAATTTTTATACAGGAGAAATATTGATATTTTTC
AGCTAAGCTTGTTTCTGGCCACTTTGCTGAAGGTGTTTTTTCCGCTGAAG
AAATTCTCTGGTAGAATTTTGGGAATCATTTATGTGTTCTATTATTTGCA
TGAATAATGATACCTTTGACTTTTTCCTTTCCAAAATGGAACCACCCCAA
TCTCCTTTAATTGTCTTAATTTCCTTGGGCTAAAAATTCTAGGATCATTA
TTGGAAAAGTTCGGAAAATATTGGTAAGATCTTTTTCCCCCCCCTGTATT
TTTAAGGTCACTGCGCTTAAAGTTCTCTCTCTTCTTTACTTCGTGAAGGG
GGCCTCTTCGGTGCCCTCGCAANTACTTGCTTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_k18.b1 MSMg01no124_k18.b1 CHROMAT_FILE:
MSMg01no124_k18.b1 PHD_FILE: MSMg01no124_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:05 2005
         (339 letters)



>mm_chrX_4768038_4768776
          Length = 739

 Score =  572 bits (296), Expect = e-168
 Identities = 329/340 (96%), Gaps = 2/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtgctatgaatatgtgagtgcagctttgcacagaggccattgtgcctgtgagttca 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtgctatgaatatgtgtgtgcagctttgcacagaggccattgtgcctgtgagttca 260

                                                                       
Query: 61  tgttcctgctgaggacagattgcaatggagacaa-aagtgtaggtgcctgctgatgtctc 119
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 261 tgttcctgctgaggacagattgcaatggaga-aagaagtgtaggtgcctgctgatgtctc 319

                                                                       
Query: 120 gagttgaggattaacctgttagtgcaggtgactgcaggggccagggaagggacctgggca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagttgaggattaacctgttagtgcaggtgactgcaggggccagggaagggacctgggca 379

                                                                       
Query: 180 aataagtgcaggagccttcagaagactagattatgtggggacagtgggctatacacagac 239
           ||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||
Sbjct: 380 aataagtgcaggagccttcagaagacttggttatgtggggacattgggctaaacacagac 439

                                                                       
Query: 240 aagctggtctccagttgagttgaggtctgaactctagtagaacctgatgtttggcaattc 299
           ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||
Sbjct: 440 aagctggtctccagttgagttgaggtctgaactctagtagaacttgatgggtggcaattc 499

                                                   
Query: 300 ccacctacatgggacagaaggcgttccctcatgtcttctg 339
           ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 500 ccacctacatgggacagaaggcgttcccttatgtcttctg 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)