BAC Information

Click to search

BAC

Clone NameMSMg01-124O11
ChromosomeX (Build37)
Map Location 14,690,416 - 14,690,644
singlet/doubletsinglet
Overlap genenone
Upstream geneEG385328, LOC668991, 4930403L05Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124O11.T7 (MSMg01no124_o11.b1)MSMg01-124O11.TJ (MSMg01no124_o11.g1)
ACCAG334136AG334137
length1,1561,332
length of high quality
(start - end)
332 (54 - 385)228 (130 - 357)
definitionCHROMAT_FILE: MSMg01no124_o11.b1 PHD_FILE: MSMg01no124_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:37 2005CHROMAT_FILE: MSMg01no124_o11.g1 PHD_FILE: MSMg01no124_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTAAGGACGCCCTATAAAGAAATGTTCAACACCCTTACCCTTCAGAGAA
CTACAAATCAAAACAATCCTGAGATTCCATCTCATACCATTTAGAATGGC
TAAGATCAAAAACTCAGGTGAGAGCAGGTCCTTGAGAGGATGTGGAGAAA
GAGGAACATTCCTCCATTGCTGATGGGATTGCAAGCTGGTACAACCATTC
TGGAAATCTGATTGGCGTTTCCTCAGAAAATTGGACATAGTACTACCTGA
GGACCCAGTAATACCATTCCTGGGCATATACTCAGAAGATGCTCCTATAT
ATAGTAAGGATCCATGCTCCACTATGTTCGTATAATCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACTCAGATGTCCCTCAACAGAGGAATGAATACA
GAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACA
ATGAATTTATGAAATTCTTAGGGCAATGGATGGAACTAGAAAATATCAAC
CTGAGTGAGGTAACCCAATCACAAAATAACATACATGCTATGCACTCCAC
TGATTAGTGGATATTAGCCTAAAAGCTTGGAATACCCAAGATACAAGTCA
TAGACCACATGAAGCTCAAGAATGACGGCCAAAGTATGGATACTTTTGTC
CTCCTTAGAAAGTGTAACAAAATACCCATGAAGGAGTTACAGAAACTACG
TGTGTATGCTACACTGAATGAAAAGCCGTTCAAAGCCTGTCCTACCTGTG
GATTCATCCCACATACAGTTCACCCAATTCCCACACTTTTATGGATGTCC
TCCATGTGCTTGTTGAACTGAAACCATATTTATCTGTCTCCCGGACAGGC
TCCACCCCTGTTCGAACAACTCCCGAGTGTGTATCGCTCCTCCCTTCTTT
TGTTATTGGATCCCTCAATCCCCCATTGAACGATCCTAAAAAAAGTCCCC
CTAGTACCTTAACGAACTTGTCTCCCCCATAGCATTATCATCTCTTCACC
CCCCCCTTATCTCCTGAACTCTCCCGGCATTATATCCCTACCCTAAAATA
CCTTTGGTTGGTCCCCATGGTTCCCTTCCCTATTGTTCACAAATACGACA
CTTTTCCTCCCCCGTTGCGAATGTAAGCCCCCTGTTCTTTTAAAAATCTT
TAGGCC
CATATCCAAATGATGTGAGNCTGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTTTGACAGAAGATTACTGACATATCTA
GTTTCTCAGTCTTGCTTTTAAAAACCTTCAGAACCATGAATCAATCCTTT
TTTTCTTCATAAAAATTTCAGTTTGTGTCTTTAGGATCTCGTAACAACAA
CAACAACAACAACAAAAGTGCCTTTCAAAAGAAGACCAGGACTCTAACCC
AGCTTCAAGGCAGGTACTTTCCCAAAATCATGCAATCAAAATGTATCTGC
AAGATACTTCAGCAGACTATCGTCAGGAGTTGAAGTCAACCACGGGTTCC
TTAATCAGTACAGCCAGAAGTGAAGACAAAGGCTGAAATGGTGTCTATAG
TATTTCTTTTTTAGATGTTCAACTTTCTAATGGTACATCTGATCCTGTCC
AAGCAACTTTTTTTTTCCCCCCCCCCATAAAGAATGTACCGTACACAAAA
AAGAGAGATGGATATGTTTTTTTTTAATTTGGAAAAGTATTACTACCACT
GCAGTGGTATTTCAGAGGGAATAATAAATGAAACATATTTATAACATTAC
AAATTGTGGCTTGCTACTAAAGTAGAGGTGCGGGGAATCATTGATTATAA
CACTATAAGAGCCGGACTAATAAGAGTACTCTTAGTAGACTGAACTATTT
GTATTCTTCTTTAAAATAATCTAGATTATCTAGTATTTCATTATTATCTG
TATCGATATTTTTGGTCATATATCTAAGGCTTGTCGAACTCTAGTGTTGG
TCTTTACTAACTTTCATATTATTTTTTTTGTTCGAAAATTGTTATTCTGT
ACCTATTACTTTGTTGGAAAACTCATTTGTTAGCCTCCTTTTGCATTTTA
AGTGTCTTCAAACAATAACTTGTATTTAATATTCGGATAAAAAACTATTG
TTTTTCTCTGCCAAAACTCTCTTTAGTATTGGTTCTCTTTGCCTACTATT
TTTTTTCTCTCCTTATACTCATTACTTTCATTTCTTCCTTCCCCTTTACC
TGTCTTCTGATCTATACCATCAGGTTAATCTTCATATTATTCTCTGTTAA
CAACTTTTTTATCAGTTTATAAATAACAAATTTTTCTTGCCTCTCTGTAA
AAAATATGTATTTATTGAATTTCCGTTAATTTATGTATGACCTTCTATGA
GTGTCCTCATTAAATCGCGGTTTATCGGTTCAACATAACTAATACTTTCT
TTCACTTGCGCCTTTTTAGTACATCTATGAAATGCTGCGTCATTTATCTA
TCACTGTCTGTCTCAACTATATCTACTACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_o11.g1 MSMg01no124_o11.g1 CHROMAT_FILE:
MSMg01no124_o11.g1 PHD_FILE: MSMg01no124_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:38 2005
         (228 letters)



>mm_chrX_14690130_14690757
          Length = 628

 Score =  427 bits (221), Expect = e-124
 Identities = 227/229 (99%), Gaps = 1/229 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaccatgaatcaatccttttttt-cttcataaaaatttcagtttgtgtctttaggatc 59
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 515 agaaccatgaatcaatcctttttttccttcataaaaatttcagtttgtgtctttaggatc 456

                                                                       
Query: 60  tcgtaacaacaacaacaacaacaacaaaagtgcctttcaaaagaagaccaggactctaac 119
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tagtaacaacaacaacaacaacaacaaaagtgcctttcaaaagaagaccaggactctaac 396

                                                                       
Query: 120 ccagcttcaaggcaggtactttcccaaaatcatgcaatcaaaatgtatctgcaagatact 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccagcttcaaggcaggtactttcccaaaatcatgcaatcaaaatgtatctgcaagatact 336

                                                            
Query: 180 tcagcagactatcgtcaggagttgaagtcaaccacgggttccttaatca 228
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tcagcagactatcgtcaggagttgaagtcaaccacgggttccttaatca 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)