BAC Information

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BAC

Clone NameMSMg01-125J19
ChromosomeX (Build37)
Map Location 131,733,986 - 131,734,519
singlet/doubletsinglet
Overlap genenone
Upstream geneArl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941, Armcx1, LOC100040933, LOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987, Nxf2, B930008K04Rik, EG621246, LOC100040635
Downstream geneTceal6, EG621322, Pramel3, EG621352, EG331529, EG621380, EG666040, EG666045, AV320801, EG621467, Nxf7, 4930534P07Rik, 1700008I05Rik, 1700129I15Rik, Gprasp1, Gprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125J19.T7 (MSMg01no125_j19.b1)MSMg01-125J19.TJ (MSMg01no125_j19.g1)
ACCAG334653AG334654
length737733
length of high quality
(start - end)
536 (46 - 581)459 (69 - 527)
definitionCHROMAT_FILE: MSMg01no125_j19.b1 PHD_FILE: MSMg01no125_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:42 2005CHROMAT_FILE: MSMg01no125_j19.g1 PHD_FILE: MSMg01no125_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGCGCGGAA
TTCCTCTTCATGTACCCGAAGCATTTCTAATACCTCAGCTCTAGCCAACA
GTTTTCACTCTCCTTGAAAACTACGGTCTACTCCACAAGGTTTATATAGC
CCTTATTATCCTGGAATAAAAAGAGCTGTTTCACTGAATACCATCTAGAA
GTGCTGTTATACTTCCTCCCGCAAGGCAGAACTGTAACACTGAACACAAT
CTTTCAGAGGTCTTCTCTCCACCCCCACCCCACTCCCAATCTCACTGATG
GGCTTTCTTACTGTTGCTCACATAAAAACAGCTATAATAAGTTCTTACTC
AAAGCTACCCTGATCGCCAATTGATAAGTATATCACAGAAGTATTCCAGA
GTGAAGGAAAGGCTATCTATTCTTGAAACGCAAAGAAGTATAACATCTAC
ATTACACATCCTCTTTACTGATTGATGTGACAACTTGCTGTTTGTTTTGA
AGATATTTCAATATGCCTTAGACCCCTGTAGCCTAATAATTTCACTAAAA
ATTTCATAGGATTTACCACTAACCCCCTTGAATTACAATTTTACAAAGGC
ATCTTCATTAATTGTCCTTACAGCTCATCGATATAATTAAATATTATATC
TTTCCATGTAGTGAATCAATATCCCAACATTTGAAGGATATCTTATTGTT
TCACACTGTATGAGACTTAGTAAAACTTTGGGAAAAC
ATAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGATTACTGCTACCCTGTCCTGTTCTTGTT
GGTGGTGCTTGTTTTTCCTCTCCAAGGTCATTGTCTTAGTCAGGTCAAAC
TTAAATGTGAACAGCAAAATAGCTTGAGCCCCCTCGTGGTGTACCAGGTT
GAGCACTTTCAAAGGTTAATCCTGGAAGTATAGGCTGAGAGCTAAAATCC
AGAGTCACTCCAGGTTTCCAAAGCAGAGAGCCACATGAATGCCAGCCAAT
GAACACAGAAGCTGATTATCTCATTCCAACAGATAGAATTAGGATTTTAC
TAACCTTTTACTCACCAGGCATGTATATACTGTCTGCAGACGCTGTCTTC
ACTCCTTAAACCCTACTAGAAACTGGTCAGAATTGGATCAATGTGTAAAG
TCACTGCCACGAGGCTGACAACCTGAGTTCAATACCCTGCACCCATATGT
TGTCAAGATGGCACCACTTCCTGCACGGTGATCTCTGACCTCACATATTT
GAGCATGCTGACAAACAAGTGTAAGAAAAATGACTTTGAATAAGACCATG
CCCTCTGTACATGATCTAGTTTTGATCTGTCCTCTTGTCATGAGCTATAT
TTGCCTTTGAATTCCAACTTCAATTGACAAAATGTCCCCGTCCAAATTGT
ATGCAGGGTCTGCGGCAGCATTTTTCCGGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_j19.b1 MSMg01no125_j19.b1 CHROMAT_FILE:
MSMg01no125_j19.b1 PHD_FILE: MSMg01no125_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:42 2005
         (536 letters)



>mm_chrX_131733784_131734719
          Length = 936

 Score =  948 bits (490), Expect = 0.0
 Identities = 523/534 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcctcttcatgtacccgaagcatttctaatacctcagctctagccaacagttttca 62
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcctcttcatgtaagtgaagcatttctaatacctcagctctagccaacagttttca 262

                                                                       
Query: 63  ctctccttgaaaactacggtctactccacaaggtttatatagcccttattatcctggaat 122
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctctccttgaaaactactgtctactccacaaggtttatatagcccttattatcctggaat 322

                                                                       
Query: 123 aaaaagagctgtttcactgaataccatctagaagtgctgttatacttcctcccgcaaggc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaaagagctgtttcactgaataccatctagaagtgctgttatacttcctcccgcaaggc 382

                                                                       
Query: 183 agaactgtaacactgaacacaatctttcagaggtcttctctccacccccaccccactccc 242
           |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 agaactgtaatattgaacaccatctttcagaggtcttctctccacccccaccccacttcc 442

                                                                       
Query: 243 aatctcactgatgggctttcttactgttgctcacataaaaacagctataataagttctta 302
           |||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct: 443 aatctcactgatgggctttcttactgttactcacgtaaaaacagctacaataagttctta 502

                                                                       
Query: 303 ctcaaagctaccctgatcgccaattgataagtatatcacagaagtattccagagtgaagg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctcaaagctaccctgatcgccaattgataagtatatcacagaagtattccagagtgaagg 562

                                                                       
Query: 363 aaaggctatctattcttgaaacgcaaagaagtataacatctacattacacatcctcttta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaggctatctattcttgaaacgcaaagaagtataacatctacattacacatcctcttta 622

                                                                       
Query: 423 ctgattgatgtgacaacttgctgtttgttttgaagatatttcaatatgccttagacccct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgattgatgtgacaacttgctgtttgttttgaagatatttcaatatgccttagacccct 682

                                                                 
Query: 483 gtagcctaataatttcactaaaaatttcataggatttaccactaacccccttga 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtagcctaataatttcactaaaaatttcataggatttaccactaacccccttga 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)