Query= MSMg01no125_l19.b1 MSMg01no125_l19.b1 CHROMAT_FILE:
MSMg01no125_l19.b1 PHD_FILE: MSMg01no125_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:52 2005
(556 letters)
>mm_chrX_135076806_135077761
Length = 956
Score = 652 bits (337), Expect = 0.0
Identities = 349/353 (98%), Gaps = 1/353 (0%)
Strand = Plus / Minus
Query: 204 tgtacctcaagaccaactataacactcctgggtatgtactcaaaaaatgctccaccatcc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tgtacctcaagaccaactataacactcctgggtatgtactcaaaaaatgctccaccatcc 897
Query: 264 cacaaagactatgttcaactatgttcctagcatctttatttgtaatagcccaaaactgga 323
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 896 cacaaagactatgttcaactatgttcctagcatctttatttgtaatagcccgaaactgga 837
Query: 324 aacaacctagatgttgctaaactaaagaatgaattaaaaaaaaaatgtggtacatctaca 383
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 836 aacaacctagatgttgctaaactaaagaatgaatt-aaaaaaaaatgtggtacatctaca 778
Query: 384 caatggaacactcttcagccagccactttttagtggcattaataactacttcatgacatg 443
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 777 caatggaacactcttcagccagccagtttttagtggcattaataactacttcatgacatg 718
Query: 444 gaacctaacactgttaatgataccaagagccaatgactagtgtgtgttaaaagccctagg 503
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 717 gaacctaacactgttaatgataccaagagccaatgactagtgtgtgttataagccctagg 658
Query: 504 ataaatcccattgactcctaatgatattttgttaaatatatagatcagagaat 556
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ataaatcccattgactcctaatgatattttgttaaatatatagatcagagaat 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_l19.g1 MSMg01no125_l19.g1 CHROMAT_FILE:
MSMg01no125_l19.g1 PHD_FILE: MSMg01no125_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:52 2005
(603 letters)
>mm_chrX_134908596_134909603
Length = 1008
Score = 1131 bits (585), Expect = 0.0
Identities = 600/608 (98%), Gaps = 5/608 (0%)
Strand = Plus / Plus
Query: 1 aataggtattttagagaaaaggggaattggatttgctaagtatcagattggagtgacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataggtattttagagaaaaggggaattggatttgctaagtatcagattggagtgacaat 260
Query: 61 gagactgattggactattgataaagtttttttttt-----aagagatccaatacttgtga 115
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gagactgattggactattgataaagtttttttttttttttaagagatccaatacttgtga 320
Query: 116 gaggaaatagtttcgtttctgacattccaggattgaattcttgataagatgtccaggttc 175
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 gaggaaatagtttcgtttctgacattccaggattgaattcttgataagatgcccaggttc 380
Query: 176 ggggaggtgttaagcaggtgcaatataaggctaaagctaagatttcaaaagggagccata 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggaggtgttaagcaggtgcaatataaggctaaagctaagatttcaaaagggagccata 440
Query: 236 ctttgtaccagaagagatggaaaccacagtgagaaactgaaaaggagcaaagacttatgc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgtaccagaagagatggaaaccacagtgagaaactgaaaaggagcaaagacttatgc 500
Query: 296 gatgtagatatttctctgttttatcatagtcctaatattttataaggtccaatcttctac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgtagatatttctctgttttatcatagtcctaatattttataaggtccaatcttctac 560
Query: 356 ttcatttcttcccttgtttcctgagagttttgctcaccaataccaagccatgacagtatg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcatttcttcccttgtttcctgagagttttgctcaccaataccaagccatgacagtatg 620
Query: 416 taatctgatttataaatggaatcagctaacaaattacacctttaaaaggcgatagcttcc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatctgatttataaatggaatcagctaacaaattacacctttaaaaggcgatagcttcc 680
Query: 476 tacaaattatacctctactttggtctaattaatttacacttattatgcttgttaaaataa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacaaattatacctctactttggtctaattaatttacacttattatgcttgttaaaataa 740
Query: 536 attctaacacattactgatcacattttanatgtcccatagaaccttaacttttgtatata 595
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 741 attctaacacattactgatcacattttaaatgtcccatagaaccttaacttttgtacata 800
Query: 596 gatttata 603
||||||||
Sbjct: 801 gatttata 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1008
Length adjustment: 10
Effective length of query: 593
Effective length of database: 998
Effective search space: 591814
Effective search space used: 591814
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
