BAC Information

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BAC

Clone NameMSMg01-126G23
ChromosomeX (Build37)
Map Location 36,521,430 - 36,522,009
singlet/doubletsinglet
Overlap genenone
Upstream geneZbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700
Downstream gene1700085A12Rik, LOC100039715, EG636756, EG636766, EG245391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126G23.T7 (MSMg01no126_g23.b1)MSMg01-126G23.TJ (MSMg01no126_g23.g1)
ACCAG335250AG335251
length703702
length of high quality
(start - end)
584 (46 - 629)517 (71 - 587)
definitionCHROMAT_FILE: MSMg01no126_g23.b1 PHD_FILE: MSMg01no126_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:49 2005CHROMAT_FILE: MSMg01no126_g23.g1 PHD_FILE: MSMg01no126_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGGAGGGGCCGACTGGAAATGGGGGCAATATTTGGAATGTAAAT
AAAACAATTCAGAATCAATAACATAAAAAGAGTGAGAGAACATGGCCAGA
GTCCAAATGCAACTTTCTTTTTCTTTTTTTAAAGATTTATGTATTTATTT
AATGTATATAAGTAGCTGTCTTCAGACACACATAACTAGCTGTCTTCAGA
GACACCTAAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCA
CGTGTTTGCTGGGAATTGAACTCGGTATCTCTAGAGATGTAGCCAGTGTT
CTTAACTGCTAAGCCATCTCTCCAGTCCCCAAATGTAACTTTCAATGGCA
TCCTCGCAGTCATCTAGTTACTCCAAATAGTCCTTACTTCCTAAAGTTTC
CGTCACTCCCCAATAGCACTTTTGACTGGGGACCAAGCCTCTAACATGTT
ACAATGTAGGGTACTTGAAATTAGAACTAAGACATTTCACCCTTGTCCTC
TGTTGTAATTTGAATGAGAAATATCTCTTATAGTCTTGGGCATTTAAACA
CTTGTCTCCAGTTGGAGGCGCTCTTTGGGAACGCTTAGGAAGCAAATTTG
GCTGGAGGAAACATGTCACTAGGGAAGGACTTTGACACCTTACAGTAGTG
TTT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCCAAGAAA
CACCTGAAAAAAATTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAAACTTAAGATTACACCTCACACCAGTCAGAATGGCTAAGATAAAAAA
TTCAGGTGAAATCAGATGCTGGTGAGGATGTGGAGAAAGAGAAACACTCC
TCCATTATTGGTGTGATTGCAAGCTTGTACAACCACTCTGGAAGTCAGTC
TGGAAGTTCCTCAGAAAATTGGACATAATACTACCAGAAGATCTAGCAAT
ACCTCTCCTGGGCATATACCCAGAATATGTTCCAACTGGTAATAAGAACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGACAGAAGCTGG
AAGGAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAAAATGTGGTA
CATTTACACAGTGGAGTACTACTCAGCTATTAAAAACAATGGATTTATGA
AATTCTTGGACAAATGGATGTATCTGGAGGATATCACCCTTAGTGAGCTT
TTTCAAATTAATTAACCCCATGTAGAAACCCTTTTACATGCCTGCCCAGA
GGCTTATCTTCTAGTTAAGCCTATATCCTTCCAAGTTGACAATCTCAACC
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_g23.b1 MSMg01no126_g23.b1 CHROMAT_FILE:
MSMg01no126_g23.b1 PHD_FILE: MSMg01no126_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:49 2005
         (584 letters)



>mm_chrX_36521226_36522209
          Length = 984

 Score = 1083 bits (560), Expect = 0.0
 Identities = 575/580 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggaggggccgactggaaatgggggcaatatttggaatgtaaataaaacaatt 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggagggggggactggaaatgggggcaatatttggaatgtaaataaaacaatt 264

                                                                       
Query: 65  cagaatcaataacataaaaagagtgagagaacatggccagagtccaaatgcaactttctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagaatcaataacataaaaagagtgagagaacatggccagagtccaaatgcaactttctt 324

                                                                       
Query: 125 tttctttttttaaagatttatgtatttatttaatgtatataagtagctgtcttcagacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttctttttttaaagatttatgtatttatttaatgtatataagtagctgtcttcagacac 384

                                                                       
Query: 185 acataactagctgtcttcagagacacctaaagagggcatcagatcccattacagatggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acataactagctgtcttcagagacacctaaagagggcatcagatcccattacagatggtt 444

                                                                       
Query: 245 gtgagccaccacgtgtttgctgggaattgaactcggtatctctagagatgtagccagtgt 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 gtgagccaccacgtgtttgctgggaattgaactcagtatctctagagatgtagccagtgt 504

                                                                       
Query: 305 tcttaactgctaagccatctctccagtccccaaatgtaactttcaatggcatcctcgcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttaactgctaagccatctctccagtccccaaatgtaactttcaatggcatcctcgcag 564

                                                                       
Query: 365 tcatctagttactccaaatagtccttacttcctaaagtttccgtcactccccaatagcac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcatctagttactccaaatagtccttacttcctaaagtttccgtcactccccaatagcac 624

                                                                       
Query: 425 ttttgactggggaccaagcctctaacatgttacaatgtagggtacttgaaattagaacta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttgactggggaccaagcctctaacatgttacaatgtagggtacttgaaattagaacta 684

                                                                       
Query: 485 agacatttcacccttgtcctctgttgtaatttgaatgagaaatatctcttatagtcttgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agacatttcacccttgtcctctgttgtaatttgaatgagaaatatctcttatagtcttgg 744

                                                   
Query: 545 gcatttaaacacttgtctccagttggaggcgctctttggg 584
           |||||||||||||||||||||||| |||| ||||||||||
Sbjct: 745 gcatttaaacacttgtctccagttcgaggtgctctttggg 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)