BAC Information

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BAC

Clone NameMSMg01-127G04
ChromosomeX (Build37)
Map Location 134,917,840 - 134,918,093
singlet/doubletsinglet
Overlap geneIl1rapl2
Upstream gene1700025D03Rik
Downstream geneNrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127G04.T7 (MSMg01no127_g04.b1)MSMg01-127G04.TJ (MSMg01no127_g04.g1)
ACCAG335943AG335944
length710725
length of high quality
(start - end)
193 (122 - 314)335 (74 - 408)
definitionCHROMAT_FILE: MSMg01no127_g04.b1 PHD_FILE: MSMg01no127_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:06 2005CHROMAT_FILE: MSMg01no127_g04.g1 PHD_FILE: MSMg01no127_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAAGATTCCATAACAAAATGGATGAGAAAACTTAAAATATTCAACATC
TTTAGGTATCATGTATCTCAAAATTAAAACTGTGAGATTTCATCTCATAT
CAGTCAGAATGGCTGGCATAGCCACTACAGAAATCGCTGTGGTGGTTTCT
CGAAAAGCTGTAAAGAAATCTATCAAATGATCCAGCTTTATAACTATTGA
TTAAATACCCAAAGGACTACATATATTGTAGAGATACTTGCTCATTCATG
TTCATTGCTGCTCCTTTTATTTATCCAGAACTTGGAAACAATGCAGAAAT
TTTTTTTTTTACCCCCCCCCCCCCCCAAAACACATCACATTCATAGAACA
GAATATTATCCCCCCCATAACAAAAAAGAAATTCATATGACTTGATATAG
CTAGAGGCAATCATCTTGTGCTGGCTATTTTTACGTCATATCTGTCACAA
ATATAGTCATTTTGTAATAATGATCATATATTGATTAAGTTTCTCCATTT
GACTGCCCATTGTGCAAGCCTTTGTTAACCTTTTTTGATTGTTGATCTTA
ATATTTATCCCTCAGCTCCTTTTTCGTCCTTCTTTATTCTTTGCTTTGTC
CGCCTTTCTATTTCTTTCCAACCCAGACTACTAATCTATTCAAACTTTTC
CGTTATTGTT
CAATGCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTATATTGTTGTTTTAAAGTAAATCA
CATAAAGTGTACTTCATGACATAACACTGTTTTATAAGACCTTGATATAA
CTTATGGAAATTTAGTGCATTAAATATAGGAAAGCATTTTAGAGGCCTTT
ATTAACTAAATTTTATTCTTTATAATGTTTTGTGAAATGTCTTAACAGAG
TTAAATAATAAATGGTATAAAATTTCTCCTTGGTACTTTTAGGGCAAAAA
TCTCACTTTTAAGATACAAATACCATCTATCCTAAGTTAATGAAAAGTCT
AGTAGACCTCCAAACCAGATGCAATTGCTAGGCATTTTCCAGCATTTGAA
TTACTGAATTGTAATATCACCCCCCACATATTTTGTATATAAAATGCACA
ATATTATATTATCATATGATTCTCTTATCGCGTCCTCCCTCCATTTCCCC
TCTTCTCCCTCATCTTTTTCTCTTCCACATCCCTCCCCCTCCTGCATTCC
TTTCTCCTTTCTTTCCCCTCCCTTTTTTTCCCCCCTCCCTTCACCTTCCT
ACCTTTTCCCCCCCTCCTTTTCGCCTCTCCTTCTTTTTTTTCTTTCCTGT
TTCCCTTTTTTTCCTTTATCCACTTCTTTTACATTTAACCCACCCTTATT
TCCCCATTACCCTTCCACCTACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_g04.g1 MSMg01no127_g04.g1 CHROMAT_FILE:
MSMg01no127_g04.g1 PHD_FILE: MSMg01no127_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:06 2005
         (335 letters)



>mm_chrX_134917640_134918374
          Length = 735

 Score =  491 bits (254), Expect = e-143
 Identities = 254/254 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatattgttgttttaaagtaaatcacataaagtgtacttcatgacataacactgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatattgttgttttaaagtaaatcacataaagtgtacttcatgacataacactgtttt 260

                                                                       
Query: 61  ataagaccttgatataacttatggaaatttagtgcattaaatataggaaagcattttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagaccttgatataacttatggaaatttagtgcattaaatataggaaagcattttaga 320

                                                                       
Query: 121 ggcctttattaactaaattttattctttataatgttttgtgaaatgtcttaacagagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcctttattaactaaattttattctttataatgttttgtgaaatgtcttaacagagtta 380

                                                                       
Query: 181 aataataaatggtataaaatttctccttggtacttttagggcaaaaatctcacttttaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataataaatggtataaaatttctccttggtacttttagggcaaaaatctcacttttaag 440

                         
Query: 241 atacaaataccatc 254
           ||||||||||||||
Sbjct: 441 atacaaataccatc 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)