XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AACTGAGCAATACCAAATGGCTGAGAAGCACCTGAAAAAATGTTCAACAT
CCTTAGACATCAAGGAAATGCAAATCAAAACAACCCCAAGATTTCACCTC
ACACCAATAACAATGGCTAAGATAAAAAATTCAGGTGACAGTAGATGCTG
GTGAGGATGTGGAGAAAGAGGGACATTCCTCCATTGTTGCTGGGATTGGA
AGTTGGGACAACCACTCTGGAAATCGGTCTGGCAGTTCCTCAGAAAATTG
GACATAGTACTACCGGAAGATCCAGCAATACCTGTCCTGGGCATATACCC
AGATGTTCCAACATGTAATAAGGACACATGCTCCACTATGTTCATATCAG
TCTTATCCCCCCCANCCAGAAGCTGGAATAAAACTCAGATGTCCCTCAAC
AGAGCAATGGATACAGAAAATGTCGGTAAATTTATGCAATGAAGCACTAC
TCAGCAATTATAAACTATGAACTCATGATACTCTTATGCTTATGCATGCA
CCTGGAGTATATCTTACACATTCCCAAAAGAATTCTTATGATGTGTACTC
TTTGTTAATTTCATATTTTCCCCCATCCTTATATAAACCCATATTTCATT
TGCACATATCATGAAATTCATTAATTAGTTCCATGTATCCTTCATACCTT
CGACAACATCTTCTGGGCTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTTGTAGCTAAGACTCTTTTCAACT
TATAGCACCTTTAAGAGGTTTTCTTGTTTTTGTTTTGTTTTAGTGTTAAG
TATATTTTCTAAAAGAGGAAAGAATCAGTACAATTAGAGACAACACACAT
TAGCATCTAACAGTCATCAATGTGCCAAATGGCACTACTGGTTCACCTAT
GTGATCCTTATTTTCTCTGAAACCTAATTTTCACAATTATAAAAAGGTAA
CAATGATAACTAATTTCTAGTGTTGTGGAGAATAAAGGAACTTGAGTTTT
CTTTTTGAGATGCTCTTTCCATAACAAAGCACCTAGAAATCATGGATAAA
ATATAAGCTCCCAAGAAAGCAAAGAAAATCTCTAGAATACAGAAAAAATA
GAAAACAGAAGTCAAAGTGATAGATAAGCTTTCAAATCACTTGATGCCAC
TATTTGGAATGTAGAACTCTGATTCCTTAAAATAAATTTCTTACTTTTAT
TAATTATGTTTGTGTGGGGATGCCTATGCTTACCACCTACTACATATGGC
AGTCTTAGGACCACTTCGTGGTACCTACTACTTTTTTTTTCCTTTCCTAT
TCCACATATTTTCTTCTTCTATATTTCAAATGTTATCCCCAAAGTCTTCT
ATATCCTCCACCCTGTTCGTT

Query= MSMg01no127_m18.g1 MSMg01no127_m18.g1 CHROMAT_FILE:
MSMg01no127_m18.g1 PHD_FILE: MSMg01no127_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:40 2005
         (495 letters)



>mm_chrX_17541131_17542028
          Length = 898

 Score =  924 bits (478), Expect = 0.0
 Identities = 492/498 (98%), Gaps = 3/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttttgtagctaagactcttttcaacttatagcacctttaagaggttttcttgtttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 acttttgtagctaagactcttttcaacttatagcacctttaagaggttttcttgtttttg 639

                                                                       
Query: 61  ttttgttttagtgttaagt---atattttctaaaagaggaaagaatcagtacaattagag 117
           |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttttgttttagtgttaagtataatattttctaaaagaggaaagaatcagtacaattagag 579

                                                                       
Query: 118 acaacacacattagcatctaacagtcatcaatgtgccaaatggcactactggttcaccta 177
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 578 acaacacacattagcatctaacagtcatcaatgtgccaaatgacactactggttcaccta 519

                                                                       
Query: 178 tgtgatccttattttctctgaaacctaattttcacaattataaaaaggtaacaatgataa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgtgatccttattttctctgaaacctaattttcacaattataaaaaggtaacaatgataa 459

                                                                       
Query: 238 ctaatttctagtgttgtggagaataaaggaacttgagttttctttttgagatgctctttc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctaatttctagtgttgtggagaataaaggaacttgagttttctttttgagatgctctttc 399

                                                                       
Query: 298 cataacaaagcacctagaaatcatggataaaatataagctcccaagaaagcaaagaaaat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 398 cataacaaagcacctagaaatcatggataaaatataagctcccaagaaagtgaagaaaat 339

                                                                       
Query: 358 ctctagaatacagaaaaaatagaaaacagaagtcaaagtgatagataagctttcaaatca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctctagaatacagaaaaaatagaaaacagaagtcaaagtgatagataagctttcaaatca 279

                                                                       
Query: 418 cttgatgccactatttggaatgtagaactctgattccttaaaataaatttcttactttta 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cttgatgccactatttggaatgtagaactctgattccttaaaataaatttcttactttta 219

                             
Query: 478 ttaattatgtttgtgtgg 495
           ||||||||||||||||||
Sbjct: 218 ttaattatgtttgtgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 898
Length adjustment: 10
Effective length of query: 485
Effective length of database: 888
Effective search space:   430680
Effective search space used:   430680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)