Query= MSMg01no128_p11.b1 MSMg01no128_p11.b1 CHROMAT_FILE:
MSMg01no128_p11.b1 PHD_FILE: MSMg01no128_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:14 2005
(513 letters)
>mm_chrX_46310345_46311258
Length = 914
Score = 905 bits (468), Expect = 0.0
Identities = 502/516 (97%), Gaps = 7/516 (1%)
Strand = Plus / Plus
Query: 1 aaagtagctttgggattagaacagcaataatctgactgtagagtctatggttcctttttt 60
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 201 aaagtagctttgggattagaacatcaataatctgactgtagagtctatggtt--tttttt 258
Query: 61 ---aatgttagatcccaaattcagccacagaatgtagatgagagaacatggtgctaatgc 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttaatgttagatcccaaattcagccacagaatgtagatgagagaacatggtgctaatgc 318
Query: 118 cccactacttaaggaatgctcagtgtttcatcttcactggcatgagtgtgttcctcataa 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 319 cccactacttaaggaatgctcagtgtttcatcttcactggcatgagtgtgttcctcatta 378
Query: 178 ttccttctagaagttggatcccagccaataccacgagtgtgcttcctttacactagtctc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttccttctagaagttggatcccagccaataccacgagtgtgcttcctttacactagtctc 438
Query: 238 atcctcgactcacttcctccttcccccttttcatatttttaaagtagctatgcagcattc 297
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 439 atccttgactcacttcctccttcccccttttcatttttttaaagtagctatgcagcattc 498
Query: 298 tttttagatttgttttatttattatgtatacgacattctgcctacctacgtagctgcagg 357
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 499 tttttagatttgttttatttattatgtatacgacattctgcctacatatgtagctgcagg 558
Query: 358 tcagaagagggcaccagatctcattatagatggttataagccaccatgtggttgctggga 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccagaagagggcaccagatctcattatagatggttataagccaccatgtggttgctggga 618
Query: 418 attgaactcaggatctctggaagaacagccagtgctcttaacctctgagccatctcccca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 attgaactcaggatctctggaagaacagccagtgctcttaacctctgagccatctcccca 678
Query: 478 gcccctcctgcatctctctctctctcagcattttcc 513
|||||||||||||||||||||||| ||||||||||
Sbjct: 679 gcccctcctgcatctctctctctc--agcattttcc 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space: 454712
Effective search space used: 454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_p11.g1 MSMg01no128_p11.g1 CHROMAT_FILE:
MSMg01no128_p11.g1 PHD_FILE: MSMg01no128_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:14 2005
(286 letters)
>mm_chrX_46478421_46479106
Length = 686
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Minus
Query: 1 tgtctgctgtctatccacacttgcataaagaaagaaagccacccctgcctctttagggaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 486 tgtctgctgtctatccacacttgcataaagaaagaaagccacccctgcctctttggggaa 427
Query: 61 ttattattttagaactagagaattaggagagtattccccctaaaagtattgacagtaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttattattttagaactagagaattaggagagtattccccctaaaagtattgacagtaagg 367
Query: 121 aaagaaatgaaagaaacagaaaactcgtttaataaattgtataaactagaaaatcaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaagaaatgaaagaaacagaaaactcgtttaataaattgtataaactagaaaatcaggaa 307
Query: 181 cacaaaactgaaaaatgaattcggcttctgtatagcccgttttacactaggcccatgtct 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 306 cacaaaactgaaaaatgaattcagcttctgtatagcccgttttacactaggcccatgtct 247
Query: 241 agcctctctgtggagagataacacttacaatggttgtaaagaatga 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agcctctctgtggagagataacacttacaatggttgtaaagaatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
