BAC Information

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BAC

Clone NameMSMg01-129F13
ChromosomeX (Build37)
Map Location 57,097,898 - 57,098,089
singlet/doubletsinglet
Overlap genenone
Upstream gene4930550L24Rik, Fgf13
Downstream geneF9, EG434782, Mcf2, Atp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1, EG236831, LOC666559, LOC671636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129F13.T7 (MSMg01no129_f13.b1)MSMg01-129F13.TJ (MSMg01no129_f13.g1)
ACCAG337379AG337380
length749703
length of high quality
(start - end)
192 (118 - 309)242 (70 - 311)
definitionCHROMAT_FILE: MSMg01no129_f13.b1 PHD_FILE: MSMg01no129_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:43 2005CHROMAT_FILE: MSMg01no129_f13.g1 PHD_FILE: MSMg01no129_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
AAGTAACAAAAACACAGTCTATCTAGAATGTAGTATTTCAATGGACTTCT
TTAAGTGATTCATCGCACACCAAGGATATCTATCTTGGAGCCATTGAATA
ACTGTCTAAAAATATTTATTTGAGTCAGGGCCAATAGTCATTTTTCAAAA
ACCATAAAAAATGGGACCTTTATTTGAGAATGCCATTCAGGATCCTTGAT
GCAGGATTTCAACCATTTTAAAACTCAAGGGAGTTCCTGATGTCAGCTCT
TATAAACAATGTTTAATTTAATGCGTGTGTGTGTGTGTGTGTGTGTGTGT
TTTTGTGCCCCCCCCCCCCCCCCCATTTTTCTCTTTCCCCTTTTTTTCTC
TTTTCCCCCCTATATACAAAAAAAAAACACATCCTTTTTCGCTCCCTTTT
ATCCCTCCTCTCCCCTTTCACTTCTTCTTTCTTTTCCCCCCTTCTCTTAC
TTTTTTTTTTTCCATCCCTCCTTACTATTAACTTTTTCTTCCCAATCTTT
TCTCTTTTTCTTTCACTATCCTCTTATTCTCACTATACTTACCCTTCTAT
TTTCCTTATCTCTATTTTTTATTTACCCCCACCCTCCATTTATCTACAAT
ATCTTTTCCTTTCCACTCATTACTCTCATATTCATCTCTTACATCCTCCC
TCCCTATCTTTACCCCCCTCTTTTCTTCCCTCTTATCACCCCCCTCCCT
ATGATGTXXXXXXXXXXXXXXXXXXXXXTTCGAAACAGGGAGGTGAACTA
TAGAATGTCAAAAAAATTCTCTGTTTATCTCTGCACCCCAATTTTAATAA
GTTTATCTGGTTCTCCCGTGTCTAACTTCTTGAGTTTTTGTATATGTAGA
ATATTAGTCTTCTATTGGATGTATGATTGGTAAAGATCTTTGCCAATCTG
TAGATTGCTGTTTGTCCTGATGACAGTATTCTTTTCCTTACAGAAGCTTT
TCAATTTTATGAGACCCTATTTGTGTATAGTGGATCTTAGAGCCTGGGCC
ATTGGTTTTCTGTTCTTGAAAATTTCCCCTGCACCGATGTGTTTGAGGCT
CTTTCCTAATACTTATTCTATTAGATTCAGTGTATCTGGTTTTATGTGGA
GGTCTTTGTTCCATTTGGACTTAAGATTTGCACAAGGCGATAAGGATAGG
TCAATTTGAACTCTTCTATATGTGGACCTCCACTTAACCAAGCCCCATTT
GATGAACATGTTCCCTTTTTTCCTTCATATGCTTTTAGGTTCTTTGTCAA
AGATTAAGTGACCTTGTGAATGTGGGTTCATTTCAGGTTTTTCCACTCTT
TTCCATTGATCTACATGCCTGTCTTTGCTACCAAACCCTGTGAATTTTAT
CATTATTTCTCTATCGTACAGTTTCAATTTCCGGCATGTGGATTCCTCCC
TTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_f13.b1 MSMg01no129_f13.b1 CHROMAT_FILE:
MSMg01no129_f13.b1 PHD_FILE: MSMg01no129_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:43 2005
         (192 letters)



>mm_chrX_57097698_57098289
          Length = 592

 Score =  348 bits (180), Expect = e-100
 Identities = 189/192 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccaaggatatctatcttggagccattgaataactgtctaaaaatatttatttgagtca 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 392 caccaaggatatctatcttgtagccattgaataactgtctaaaaatatttatttgagtca 333

                                                                       
Query: 61  gggccaatagtcatttttcaaaaaccataaaaaatgggacctttatttgagaatgccatt 120
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 332 gggcctatagtcatttttcaaaaaccataaaaaatgggatctttatttgagaatgccatt 273

                                                                       
Query: 121 caggatccttgatgcaggatttcaaccattttaaaactcaagggagttcctgatgtcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 caggatccttgatgcaggatttcaaccattttaaaactcaagggagttcctgatgtcagc 213

                       
Query: 181 tcttataaacaa 192
           ||||||||||||
Sbjct: 212 tcttataaacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)