Query= MSMg01no129_g19.b1 MSMg01no129_g19.b1 CHROMAT_FILE:
MSMg01no129_g19.b1 PHD_FILE: MSMg01no129_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:49 2005
(584 letters)
>mm_chrX_68911854_68912837
Length = 984
Score = 967 bits (500), Expect = 0.0
Identities = 506/508 (99%)
Strand = Plus / Minus
Query: 77 taggaaggcacatagaaacccatgggggacctgggtgcaccccatcttagcaccaagggg 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 taggaaggcacatagaaacccatgggggacctgggtgcaccccatcttagcaccaagggg 925
Query: 137 atatttatttgatggatggtggctctatttcacttgattcttaaaaggaaaagcaaactt 196
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 924 atatttatttgatggatggtggttctatttcacttgattcttaaaaggaaaagcaaactt 865
Query: 197 gagggttggggtatgcccagcaatagagtgcttggttaacacatgtacgaccctgagttt 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gagggttggggtatgcccagcaatagagtgcttggttaacacatgtacgaccctgagttt 805
Query: 257 catgttcaggacttaaaaaacaataacttgaagtgagctgttccaggggtctcagacgag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 catgttcaggacttaaaaaacaataacttgaagtgagctgttccaggggtctcagacgag 745
Query: 317 ttagttgtctctatatctataactcacagcagaatgcagatacccatactgcctcatgag 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttagttgtctctatatctataactcacagcagaatgcagatacccatactgcctcatgag 685
Query: 377 tttagaatgagataacacaggcaagcacctggaccactaatcagagctgaataagcatac 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttagaatgagataacacaggcaagcacctggaccactaatcagagctgaataagcatac 625
Query: 437 aatgagccctagttgctacaacagtggtgatgaaagcttctaatattttattaaaattgg 496
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatgagccctagttgctataacagtggtgatgaaagcttctaatattttattaaaattgg 565
Query: 497 atttttttgcacttccatggaggataggctctctcaggagatcagagtctctgtgccctg 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atttttttgcacttccatggaggataggctctctcaggagatcagagtctctgtgccctg 505
Query: 557 ctggctcaggctccaaaatctcttgcct 584
||||||||||||||||||||||||||||
Sbjct: 504 ctggctcaggctccaaaatctcttgcct 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_g19.g1 MSMg01no129_g19.g1 CHROMAT_FILE:
MSMg01no129_g19.g1 PHD_FILE: MSMg01no129_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:49 2005
(598 letters)
>mm_chrX_68783572_68784570
Length = 999
Score = 1029 bits (532), Expect = 0.0
Identities = 564/584 (96%), Gaps = 18/584 (3%)
Strand = Plus / Plus
Query: 1 ttagttactagggagtggcactacttgagaggattagaaagtgtgcccttgttggaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ttagttactagggagtggcactacttgagaggattagaaagtgtgcccttgttggaggaa 275
Query: 61 gtgtgtcactgaggaggtgggctttgaggtttcaaaagctcaagctaggcccagagtctc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 276 gtgtgtcactgaggaggtgggctttgaggtttcaaaagctcaagccaggcccagagtctc 335
Query: 121 tctttcagctggctgaagataaggatgtagaactctccgctacatttccagctccatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tctttcagctggctgaagataaggatgtagaactctccgctacatttccagctccatgtg 395
Query: 181 cgcctgtgtgacacaatgctccccattgtgagaaaacctctgaaactataagcaagtccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cgcctgtgtgacacaatgctccccattgtgagaaaacctctgaaactataagcaagtccc 455
Query: 241 aattaaatgctttctttctttctttctttctttctttctttctttctttctttctttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aattaaatgctttctttctttctttctttctttctttctttctttctttctttctttctt 515
Query: 301 tctttctttctttctttctttctttctttctttctttctttccaaatgctttctttttta 360
||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 516 tctttctttctttctttctttcttt-ttt--------------aaatgctttctttttta 560
Query: 361 agagttgccttggtcatggtttctcttcacagtaacagaacactgagacatatacctgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagttgccttggtcatggtttctcttcacagtaacagaacactgagacatatacctgcc 620
Query: 421 aattttttttccatttctttttcttcttctgattccaatcttagtgcccttgctgcatgc 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 aattttttttccatttctttttcttcttcggattccaatcttagtgcccttgctgcatgc 680
Query: 481 agttggtattctgactgaatagtttctcaatctttcttcattttgcttgacctctacagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agttggtattctgactgaatagtttctcaatctttcttcattttgcttgacctctacagc 740
Query: 541 tttcttgctgtttgatgagtt-ttttttttttttggtttttttt 583
||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 741 tttcttgctgtttgatgagttgtttttttttttt--tttttttt 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 999
Length adjustment: 10
Effective length of query: 588
Effective length of database: 989
Effective search space: 581532
Effective search space used: 581532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
