BAC Information

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BAC

Clone NameMSMg01-129G21
ChromosomeX (Build37)
Map Location 148,062,853 - 148,063,190
singlet/doubletsinglet
Overlap genenone
Upstream genePfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278, ORF34, LOC623804, LOC100039760, Phf8
Downstream geneLOC385448, LOC237116, Huwe1, LOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412, LOC635396, EG667130, Shroom2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129G21.T7 (MSMg01no129_g21.b1)MSMg01-129G21.TJ (MSMg01no129_g21.g1)
ACCAG337441AG337442
length747750
length of high quality
(start - end)
284 (46 - 329)339 (76 - 414)
definitionCHROMAT_FILE: MSMg01no129_g21.b1 PHD_FILE: MSMg01no129_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:50 2005CHROMAT_FILE: MSMg01no129_g21.g1 PHD_FILE: MSMg01no129_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTTGTGTGTACATGTACCACGTTTTCTTTATCTAGTTGTCAGTC
AAAGGACTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCGAGACAGGGTTT
CTCTGTATAGCCCCGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC
CTCGAACTCAAGAGATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAA
AGGCGTGCGCCACCACACCCGGCTCAAAGGACATTTTATTGTTAGTATTT
GTTAGCTGTCTTTACTAAGAAGCAGTAAATATAGCTGAACAAGTAACTGT
TGTATGGTAGCTCTACTTTTAACTTTTTGAGACTTCTTCACACTGATTTT
TACATCATACTATATTCCGCCCTGAAATTGATCATGTATTGTTGTAGCTG
GCATCTGGGATACAATGGGTGAGGACTCTTTATTTTTTAATATTCTCAGT
GTTTACCCTTTAATTTTTAAAATGAATTTTTAAAGATTTTTTTGCTTATA
TGTAGATAATGGGAGTCTGTGCCCATGTATGCTGTGCCCGCCTGCCTGCC
TTCCTGAGCCATAAAAAAGCTTCAAATCCTTTGGAACTGGAGTTACAGGT
GCTTATGAAAGAATCCACCGCATAGAATTAACGTGTGTTCTCTGGAATAA
CAGCCAGTGCTCTTATGTATGAACCCATTGCTCCAGCCCACGCGTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGTAGATCAGGCTGGCCTTGA
ACTCAGAGATCCATCTGCCTCTTTCTCCCAAGTTCTGTGACTAAAGGCAT
GCAACACCACTGCCTAGCCAGAATTCATTAATATTCATGAGAAAAGATTC
CTGCTAAGACTTTGGCTGAACAGAGCAGATTCTGAAACCAGAGTTTGCAT
CTCAACTTGAAAATGTCATTATATCTGTAACCTTAGGAAAATAACTTAAG
GCTGGAGAGATGGCTCAGCAGTTAATAGCACTAGCTGCGTTTCCAGAGGA
CCCAGGTATAATTCTCAGCACCCACATGACATATCATAACTGTCTGTAAC
TCTAGTTCTAGGGTATCCGCCCCCCTCACATACACATACATACAGGGAAA
ATATCAATGCTCATTTTTTTAAAAAATGGAAAATAACAGGTAAGTATAAA
GCTTTTTCACCCTTAGAACGCCAATATAATTATTTTTTACAATTTATTCA
CTTACTTATTTACTTATTTACCCATCTATCTATTTATTTATTTATTTATT
ATAAACGCAGCACGCCATATGAGGGCCCCAGATGTGATTATAGGTGGTTG
TCAGTCACACCATGCGCTTGTTGGTAATTGAATTCAGGACCTCTGGAATA
GCACTCAGTGTTCTTAACCTCTGAACTATCTCTCAAGCCTGGGTATATTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_g21.g1 MSMg01no129_g21.g1 CHROMAT_FILE:
MSMg01no129_g21.g1 PHD_FILE: MSMg01no129_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:50 2005
         (339 letters)



>mm_chrX_148062653_148063391
          Length = 739

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccagtagatcaggctggccttgaactcagagatccatctgcctctttctcccaagttc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccagtagatcagactggccttgaactcagagatccatctgcctctttctcccaagttc 260

                                                                       
Query: 61  tgtgactaaaggcatgcaacaccactgcctagccagaattcattaatattcatgagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgactaaaggcatgcaacaccactgcctagccagaattcattaatattcatgagaaaa 320

                                                                       
Query: 121 gattcctgctaagactttggctgaacagagcagattctgaaaccagagtttgcatctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattcctgctaagactttggctgaacagagcagattctgaaaccagagtttgcatctcaa 380

                                                                       
Query: 181 cttgaaaatgtcattatatctgtaaccttaggaaaataacttaaggctggagagatggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgaaaatgtcattatatctgtaaccttaggaaaataacttaaggctggagagatggct 440

                                                                       
Query: 241 cagcagttaatagcactagctgcgtttccagaggacccaggtataattctcagcacccac 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcagttaagagcactagctgcgtttccagaggacccaggtataattctcagcacccac 500

                                                 
Query: 301 atgacatatcataactgtctgtaactctagttctaggg 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgacatatcataactgtctgtaactctagttctaggg 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)