BAC Information

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BAC

Clone NameMSMg01-129N18
ChromosomeX (Build37)
Map Location 94,898,072 - 94,898,664
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l, Eda2r
Downstream geneLOC668244, Ar, LOC100042324, Ophn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129N18.T7 (MSMg01no129_n18.b1)MSMg01-129N18.TJ (MSMg01no129_n18.g1)
ACCAG337759AG337760
length727728
length of high quality
(start - end)
600 (31 - 630)576 (71 - 646)
definitionCHROMAT_FILE: MSMg01no129_n18.b1 PHD_FILE: MSMg01no129_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:25 2005CHROMAT_FILE: MSMg01no129_n18.g1 PHD_FILE: MSMg01no129_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGGCGCTATACGACTCCTATAGTCAGAGGATCCGCGGAATTCCTGAAA
AGTATTCGATGCTAAACTATGTGGGTTTTTTTTTTGTTAGATTTCTGTCT
CTAAAATTCATTACCCTGATGAACATAGGTAAATTAATTAAATTCTCTGA
CTTTTTATTCCTAAATTTGAAAAATGAAAATAAAATAAAATTCTATGATG
CAAAGTACCAACTAGACATATTAGTTTAAAATTCTTAGTGAATGCAGTTG
TTAATATTCACAATAAAATTCACATGAAATAATGTAGTGTTCCAGCAAGA
AGAAATTAAATTCCTGTCATTGCTGCTGTGTGGGCTATGGTGTTATTTGG
TAATGAAGCTGAGAAAGAAATGTGGAGAACAGAATAAGAAAGACCTGGAA
GGAATGTGAAACATTTACCTTTGAGTTATACATTACAAGACACTCACTAA
GGAGAATACAGATTCAAAGGGGAAGTGTAGAATATTTGATGGAATGATAC
ACTCATAACAAATTGATGCCAAGCTCCTCTACATTGGCTCTGTGACAGGA
GCAATATAGCACCTAACAAATAGGTATATAAATATAAAAATCTATTTTTT
TACAATAACATCCACTGAACTAGTTGAAGTAAAAAAATGGTATGGCTGGT
TTTAAATGAAGGAGAAATTTTTCTTAATAGTTAAAACTCATGTATCATGA
AACTCAAAAAAATCAGTTTTAGTTAAC
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCCTTGGCCCATTTTTTAAT
AGGGTTATTTGAGTTTCTGGACCCCATCTTCTTGAGTTCTTTATATATAT
TGGACTTTAACTCACTATCAGATTTAGGATTGGAAAAGTTCTTTTCCCAA
TCTGTTGGTCGCCTTTTGTTTTATTGACAGTGTCTTTTGCCTTACAGAGG
GTTTGCAATTTTATGAGGTCCAATTTGTCAATTCTTGATCTTACAGCACA
AGCCACTGGTATTCTGTTCAGGAATCTTTCCCCTGTGCCCATATCTTCGA
GACTCTTCCCCTCTTTCTCCTCTATAAGCTTCAGTGTCTCTGGTTTTATG
TGGAGTTCCTTGATCCACTTCGACTTGAGCTTTGTACAAGGATATAAGAA
TGGATCAATTCACATTCTTCTACATGCTATGCCGGTTGACCCAGCACCAT
TTGTTGAAGATGCTGTCTTCTTTTCATTGGATGGTTTTAGCTCCTTTGTC
AAAGATCAAGTGATCATAGATGTGTAGGTTCATTTCTGGCTCTTTAATTC
TGTTCCATTGATCTGCCTGTCTGTCACTGTACAATTACCATGCAGCTGTT
ATCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGGATGCTGATTCCACC
ACAGGACTTTTATTGTTGAGAATAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_n18.b1 MSMg01no129_n18.b1 CHROMAT_FILE:
MSMg01no129_n18.b1 PHD_FILE: MSMg01no129_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:25 2005
         (600 letters)



>mm_chrX_94897921_94898920
          Length = 1000

 Score = 1100 bits (569), Expect = 0.0
 Identities = 587/593 (98%), Gaps = 1/593 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcctgaaaagtattcgatgctaaactatgtgggttttttttttgttagatttctgt 68
           |||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct: 744 gaattcctgaaaaggatttgatactcaactatgtgggttttttttttgttagatttctgt 685

                                                                       
Query: 69  ctctaaaattcattaccctgatgaacataggtaaattaattaaattctctgactttttat 128
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctctaaaattcattagcctgatgaacataggtaaattaattaaattctctgactttttat 625

                                                                       
Query: 129 tcctaaatttgaaaaatgaaaataaaataaaattctatgatgcaaagtaccaactagaca 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcctaaatttgaaaaatgaaaataaaataaaattctatgatgcaaagtaccaactagaca 565

                                                                       
Query: 189 tattagtttaaaattcttagtgaatgcagttgttaatattcacaataaaattcacatgaa 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tattagtttaaaattcttagtgaatgcagttgttaatattcacaataaaattcacatgaa 505

                                                                       
Query: 249 ataatgtagtgttccagcaagaagaaattaaattcctgtcattgctgctgtgtgggctat 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataatgtagtgttccagcaagaagaaattaaattcctgtcattgctgctgtgtgggctat 445

                                                                       
Query: 309 ggtgttatttggtaatgaagctgagaaagaaatgtggagaacagaataagaaagacctgg 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggtgttatttggtaatgaagctgagaaagaaatgtggagaacagaataagaaagacctgg 385

                                                                       
Query: 369 aaggaatgtgaaacatttacctttgagttatacattacaagacactcactaaggagaata 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaggaatgtgaaacatttacctttgagttatacattacaagacactcactaaggagaata 325

                                                                       
Query: 429 cagattcaaaggggaagtgtagaatatttgatggaatgatacactcataacaaattgatg 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagattcaaaggggaagtgtagaatatttgatggaatgatacactcataacaaattgatg 265

                                                                       
Query: 489 ccaagctcctctacattggctctgtgacaggagcaatatagcacctaacaaataggtata 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaagctcctctacattggctctgtgacaggagcaatatagcacctaacaaataggtata 205

                                                                
Query: 549 taaatataaaaatcta-tttttttacaataacatccactgaactagttgaagt 600
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 taaatataaaaatctattttttttacaataacatccactgaactagttgaagt 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)