BAC Information

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BAC

Clone NameMSMg01-130O22
ChromosomeX (Build37)
Map Location 62,849,751 - 62,850,061
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040011, Ctag2
Downstream geneLOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130O22.T7 (MSMg01no130_o22.b1)MSMg01-130O22.TJ (MSMg01no130_o22.g1)
ACCAG338563AG338564
length7111,179
length of high quality
(start - end)
319 (47 - 365)709 (139 - 847)
definitionCHROMAT_FILE: MSMg01no130_o22.b1 PHD_FILE: MSMg01no130_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:58 2005CHROMAT_FILE: MSMg01no130_o22.g1 PHD_FILE: MSMg01no130_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATTACTGATTTCTTTAACTTGCAGAATATTTGTGAATATCAAA
GCTACACAAAACAGTGGTGTCAAAACCAAAAACGAAATACAGAAACACCT
TTACAACCACCATTAGTTAGTGTATAAATAGAAAAACAAAATTATTGAAT
AGTGTCCTCTATTTTTTTCTTAATCTGAGTAAGATGAGTTTATGGACAAC
CTTGCACAAATTTCATGAAATCATGCCCTATACCATAGTTATTATAATCA
TGTGCAACTAACCCAATAGGTACCCTAGTAATCGAAGAAAATATCTCAAC
ACACCCCCCCACATATTTTTTTTGCGCCCCCCCCCCCCACTGATCAAATT
CTGTGGGATGAGTTCATTTTACCTCCTCAATAAAATTCCCCATGACAAAG
ATTCATGTCACAAAACTATTACATAATTCAATTACCTGCAAAATGGCCTT
ATCTTAGCTGCTTCTGTCTATTTGGAAATATCTCCCTACAGATTCTATCA
CATAATGCAGGAAATGTACTAAAAATTATTTTTAAAAATACAGACCAACC
TCTTAAATACAGTCAGTGCAGTGCCCTTCTAGTGATATATTTGGGAGTAA
TGAAAAGTTCATTCACTAAACCATTTGAAACGTCACACTACACTCCACTT
CAAAAATTCAT
NCCATCTCTNNNNNACACCATGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGACCATAATAGAGGGAG
ACTTCAATTGATAGATCCCGTAAACACACACTAAACCGAGACACAGTAAA
ACTAACAGAAGTAATAAACTAAATGGAGTTAACAAATATCTGCAGAAAAT
TTCACCCTAAAACAAAAGAATATACCTCCTGCTTAGTACCTCATAGTACC
GTCTCTGAAATTGACCACATAGTCAGTCACAAAACAGGTCACAACAGATA
TAAGAAGACGGAAATAATCCCATGTATTCCCTTAGAACACCGGGAATAAG
ACTGATTTTCAACAACAATAAAAAGAACAAAAAGCTCATATCCTCATGGA
AACTGAATTTTTCTCTATTCAATGATAATTTGGTCAGGGAAGAAATAAAC
ATAAAAATTAAAGAATTTCTAGAATTTAAAGTAAATGAAGGCACAACATA
CCCACACTTATGGGACACAATGAAAGCAGTGTTGAGGAATATTCATAACA
CTGTGTGCATTCATAAAGAAATTACAGAGATCCTACACTAGAAACTGAAC
TATACATTTGAAAGCTTTAGAACAAAAAGAAGCAAACACATCCAAGAATA
TTAGACAGCAGGAAAAAAAAAACAAACTCAGGATTGAAATCAACCAAGTA
TAAGTAAAGAAAATTATACAAAAAAATCAATAAAACTAACAACATTGAGT
AAATCAACAAGATAGATAAACCCATAGTTAAACTAACTAAGGGGCACACA
GACAGTATTTAAATTAACAGAATCAGAAAAAAAAAGACAAAACAACAGAA
GTTGAAGGAACTGAAGGGGATTGCAACCACATAGGAGGAACAATAATATC
AACTAACCTGACTGCCCAGAGCTCCCAGGGACTAACCCATCACCCAAAAA
TACACATGGAAGGAACCATGGCTCCCACTAAATGGGGAACAGAAGAAGGG
CCCTTAATGGGCTCCAGTGGGAGAGGAAAAACCCTTTGTTCTGGTAAAGG
CTTTGATACCCCCCGCGGTAAAGAAAAGGTTTCAAACCTGGGGGGAAAGG
AAAATTTAGGGGGAAAGGGGAGAGGACACCCTTTCCTAAGGCCAAAAAAT
ATGGCGAAAAATGGGATGGGGGCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_o22.b1 MSMg01no130_o22.b1 CHROMAT_FILE:
MSMg01no130_o22.b1 PHD_FILE: MSMg01no130_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:58 2005
         (319 letters)



>mm_chrX_62849547_62850265
          Length = 719

 Score =  563 bits (291), Expect = e-165
 Identities = 307/313 (98%), Gaps = 2/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattactgatttctttaacttgcagaatatttgtgaatatcaaagctacacaaa 64
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcaattactgatttatttaacttgcagaatatttgtgaatatcaaagccacacaaa 264

                                                                       
Query: 65  acagtggtgtcaaaaccaaaaacgaaatacagaaacacctttacaaccaccattagttag 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagtggtgtcaaaactaaaaacgaaatacagaaacacctttacaaccaccattagttag 324

                                                                       
Query: 125 tgtataaatagaaaaacaaaattattgaatagtgtcctctatttttttcttaatctgagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtataaatagaaaaacaaaattattgaatagtgtcctctatttttttcttaatctgagt 384

                                                                       
Query: 185 aagatgagtttatggacaaccttgcacaaatttcatgaaatcatgccctataccatagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagatgagtttatggacaaccttgcacaaatttcatgaaatcatgccctataccatagtt 444

                                                                       
Query: 245 attataatcatgtgcaactaacccaataggtaccctagtaatcgaagaaaatatctcaac 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 attataatcatgtgcaactaacccaataggtaccctaggaatcgaagaaaatatctcaac 504

                        
Query: 305 acacccccccaca 317
           ||  |||||||||
Sbjct: 505 ac--ccccccaca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)