NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGATCCGCG
GAATTCTTTTGTTACATAAGGATGTTGAACACCCAGAACTAGACATTTAA
TACTGAAATATTGACCTGTCTGCGCAGATACATTCACTGGTTTGTGATTG
AGTTTGAGGTCTGCTCCATAGGAGGTAATTTCATGTTTTGAGAGTTCAAA
ATTCTACAACTGAAGAGCTCATAGGCTTTACGGTAAGACCTGTTAATCTT
AATTTTTAAAATGTTCATGCTGTCAAATTATGTTACTACTTACATTTATT
AACATAGGACTGAACTGTCCTCAATTTTGGCCAGAGAAGATTCTTTTTGT
ACTTGAGAGCAGTTAATGGACTGATGCCTAACCAGGTCAACAAGAGAGTG
AATAATTAGCTGTCATTAGTAATAGGCATAACATGTTATGTCAAGTCTCT
CCTGGAAAGTATGTATATGCTAGAAATTCTCTAGAATAAATAAATTATAT
ACTAAATAAAATCTATTCAAATATAGTAAGCTCAAAATCCAAAGTCTTAC
CTTCCTGAAATGACCAATATTTTCTTATTTATTTTCTGTATTTGGAAAAC
TGATTAATTTTGATCTTCAAACTCGGGATGATGTCATGTCTTAAAATTAA
GAAGTGACATAAAATTTAATCTCAAATTCCATAAACAGTTGAGTATTTTA
AAGACAAATA

TTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCTGCGAAATTCTCTAAGGTCCTTGATATAGCTCTTTA
TTTTTTCCCCACTAAGTCATATTGGAGCAGAGAGTTCATTATTTTCCATG
AGTATATGGGCTTTTGTTGGTTTTGCTGCTATTGAAGTCTAGCTTTTAAC
CATGGTGATTTGATAGAATTCATGAAAAAAAACAGGATAGGGGAGTGGGG
GGGTATGGGTGACTTTTGGGATAGCATTGGAAATGTTATTGATGATATAT
ACCTATTCCCAAAAAAATTATTTTTTTTATTATTTACCAATCTCTATATA
TGCCATAAGTCTGATTATACACCCAATTCTGTAACAGGATCCTTGAGCTG
CTTAACCCAAGTTATATTCACCCCGTTTTTTTTTACAAATATTCTAAGAT
AATGAATTATTTTTCATTTTTATGATTATATTTATATTTTTATATATCCT
CCTCCCTCTTCCAATTCTCCTATTCTTTTTTACTTCTCTTCACATTCTAT
ACACCTCCTACTCTCATCTTTTCTTTCTTCTTCTTTTTATATTTTTATTT
TATTTTTATATAATATATCTAACAACAAATAATTATTCTACTCTTTTTAT
TACATAATATTCTTCCTATTTATTATTATATTTATCATATTTATTTTTGT
ATTTAATTATCTATTTACTCCACACCAATACCCTTAATATATCTATAGAA
TATACACTC

Query= MSMg01no131_m20.b1 MSMg01no131_m20.b1 CHROMAT_FILE:
MSMg01no131_m20.b1 PHD_FILE: MSMg01no131_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:08 2005
         (638 letters)



>mm_chrX_79171847_79172884
          Length = 1038

 Score = 1174 bits (607), Expect = 0.0
 Identities = 631/639 (98%), Gaps = 2/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgaacacccagaactagacatttaatactgaaatattgacctgtctgcgca-gatac 59
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 201 tgttgaacacccagaactagacatttaatactgaaatattgacctgtctg-gcaagatac 259

                                                                       
Query: 60  attcactggtttgtgattgagtttgaggtctgctccataggaggtaatttcatgttttga 119
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||
Sbjct: 260 attcactggtttgtgattgagtttgaggtctgctccataggaagtaatttcatgtgatga 319

                                                                       
Query: 120 gagttcaaaattctacaactgaagagctcataggctttacggtaagacctgttaatctta 179
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagttccaaattctacaactgaagagctcataggctttacggtaagacctgttaatctta 379

                                                                       
Query: 180 atttttaaaatgttcatgctgtcaaattatgttactacttacatttattaacataggact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atttttaaaatgttcatgctgtcaaattatgttactacttacatttattaacataggact 439

                                                                       
Query: 240 gaactgtcctcaattttggccagagaagattctttttgtacttgagagcagttaatggac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaactgtcctcaattttggccagagaagattctttttgtacttgagagcagttaatggac 499

                                                                       
Query: 300 tgatgcctaaccaggtcaacaagagagtgaataattagctgtcattagtaataggcataa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgatgcctaaccaggtcaacaagagagtgaataattagctgtcattagtaataggcataa 559

                                                                       
Query: 360 catgttatgtcaagtctctcctggaaagtatgtatatgctagaaattctctagaataaat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catgttatgtcaagtctctcctggaaagtatgtatatgctagaaattctctagaataaat 619

                                                                       
Query: 420 aaattatatactaaataaaatctattcaaatatagtaagctcaaaatccaaagtcttacc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaattatatactaaataaaatctattcaaatatagtaagctcaaaatccaaagtcttacc 679

                                                                       
Query: 480 ttcctgaaatgaccaatattttcttatttattttctgtatttggaaaactgattaatttt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcctgaaatgaccaatattttcttatttattttctgtatttggaaaactgattaatttt 739

                                                                       
Query: 540 gatcttcaaactcgggatgatgtcatgtcttaaaattaagaagtgacataaaatttaatc 599
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gatcttcaaactcgggatcatgtcatgtcttaaaattaagaagtgacataaaatttaatc 799

                                                  
Query: 600 tcaaattccataaacagttgagtattttaaagacaaata 638
           ||||||||||| |||||||||||||||||||||||||||
Sbjct: 800 tcaaattccattaacagttgagtattttaaagacaaata 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)