Query= MSMg01no132_b21.b1 MSMg01no132_b21.b1 CHROMAT_FILE:
MSMg01no132_b21.b1 PHD_FILE: MSMg01no132_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:32 2005
(680 letters)
>mm_chrX_84812235_84813315
Length = 1081
Score = 543 bits (281), Expect = e-158
Identities = 302/309 (97%), Gaps = 3/309 (0%)
Strand = Plus / Minus
Query: 373 tttccatgattatttgtagtaaacagctactaattaaaaaataaattctgctttagtttt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tttccatgattatttgtagtaaacagctactaattaaaaaataaattctgctttagtttt 1022
Query: 433 tccacttttggcaagaattaatgaaaatggtataaatatttgtgtgtaggaatttgtgtg 492
||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1021 tccacttttgggaaggattaatgaaaatggtataaatatttgtatgtaggaatttgtgtg 962
Query: 493 aacaaaagtgttcagtccactgaggaaatatttatgaatgagtttactgagtcatatgag 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aacaaaagtgttcagtccactgaggaaatatttatgaatgagtttactgagtcatatgag 902
Query: 553 aagagtatgactacttttgtataaattaaaaaaaaa-actccttcctaattgtcttt-ta 610
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct: 901 aagagtatgactacttttgtataaattaaaaaaaaagactccttcctaattgt-tttcta 843
Query: 611 tagtaacatagctatagctaccctcctatctcaccaacaataactgatggtatttattgg 670
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 tagtaacatagctacagctaccctcctatctcaccaacaataactgatggtatttattgg 783
Query: 671 tctacatcc 679
|||||||||
Sbjct: 782 tctacatcc 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space: 717570
Effective search space used: 717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_b21.g1 MSMg01no132_b21.g1 CHROMAT_FILE:
MSMg01no132_b21.g1 PHD_FILE: MSMg01no132_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:32 2005
(648 letters)
>mm_chrX_84678714_84679761
Length = 1048
Score = 793 bits (410), Expect = 0.0
Identities = 432/444 (97%), Gaps = 8/444 (1%)
Strand = Plus / Plus
Query: 1 attttatccatcttggtgacaagtaatccatctcaatactctattttttaagccattcaa 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 201 attttatccatcttggtgacaagtaatccagctcaatactctattttttaagtcattcaa 260
Query: 61 ttatgtatttgggattatctttattgaatctataactatataacctagtgaataattatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatgtatttgggattatctttattgaatctataactatataacctagtgaataattatc 320
Query: 121 tgaatttatgtctcaaaacttagaaattgaccctttatgtcattcttatatctgtagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatttatgtctcaaaacttagaaattgaccctttatgtcattcttatatctgtagctt 380
Query: 181 gcttaagtctaattaaataactagaattatctatgtatctatatgcatttttctactatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttaagtctaattaaataactagaattatctatgtatctatatgcatttttctactatt 440
Query: 241 gatgaggcatacaacgtacaataagcatgttttaaatgaatgtgtggttatgtaagtaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgaggcatacaacgtacaataagcatgttttaaatgaatgtgtggttatgtaagtaaa 500
Query: 301 tatttacattgagcttaagtctaattaaataactagaattatctatgtatctatatgcat 360
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 tatttacattgagcttaagtctaattaaataactagaattatctat--------atgcat 552
Query: 361 ttttctactattgatgaggcatacaacatacaataagcatgttttaaatgaatgtgtggt 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 553 ttttctactattgatgaggcatacaacgtacaataagcatgttttaaatgaatgtgtggt 612
Query: 421 tatgtaagtaaatacttacattga 444
|||||||||||||| |||||||||
Sbjct: 613 tatgtaagtaaatatttacattga 636
Score = 255 bits (132), Expect = 6e-72
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 445 gcttaagtctaattaaataactagaattatctatgtatctatatgcatttttctactatt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttaagtctaattaaataactagaattatctatgtatctatatgcatttttctactatt 440
Query: 505 gatgaggcatacaacgtacaataagcatgttttaaatgaatgtgtggttatgtaagtaaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgaggcatacaacgtacaataagcatgttttaaatgaatgtgtggttatgtaagtaaa 500
Query: 565 tatttacattga 576
||||||||||||
Sbjct: 501 tatttacattga 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 2
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
