Query= MSMg01no132_e19.b1 MSMg01no132_e19.b1 CHROMAT_FILE:
MSMg01no132_e19.b1 PHD_FILE: MSMg01no132_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:47 2005
(697 letters)
>mm_chrX_110020357_110021453
Length = 1097
Score = 1303 bits (674), Expect = 0.0
Identities = 689/694 (99%), Gaps = 1/694 (0%)
Strand = Plus / Plus
Query: 4 gaattcgtttaggag-ttacttatattctctttgattttgtttctcgctttgataaccct 62
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcgtttaggagtttatttatattctctttgattttgtttctcgctttgataaccct 262
Query: 63 catttaacattctgtatatcctgtataccagcttggtaccatctttcctcctgacttgat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catttaacattctgtatatcctgtataccagcttggtaccatctttcctcctgacttgat 322
Query: 123 cccaatcaaaccattcccaacctctatacccaccccactccaacactttgtcttcatgcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cccaatcaaaccattcccaacctctatacccaccccactccaacactttgtcttcatgcc 382
Query: 183 caacctggcctatctatgacaaactcctcatcaccagaatgctagccttatgaaagaatg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caacctggcctatctatgacaaactcctcatcaccagaatgctagccttatgaaagaatg 442
Query: 243 agttagtgtcttttctccaaaatgtacaagttgtatagaaatccttgccaatgagagtta 302
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 443 agttagtgtcttttctccaaaatgtacaagttgtatagaaatccttaccaatgagagtta 502
Query: 303 cctagatgaactccaggacacagaatttcaaagaataatcatggtatagaaagattggtt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctagatgaactccaggacacagaatttcaaagaataatcatggtatagaaagattggtt 562
Query: 363 ttatataagttcatgaatacaggacaggatagcaagttcccattaaaccagatgttgcta 422
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 563 ttatataagttcatgaatacaggataggatagcaagttcccattaaaccagatgttgcta 622
Query: 423 actgtattcctgactctgtagactctgttttataaaacctattttgtctgattataaaga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 actgtattcctgactctgtagactctgttttataaaacctattttgtctgattataaaga 682
Query: 483 caaataaattgcatggcatatggtccaagtacacttctcaatccatttacattcattctg 542
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 683 caaataaattgcatggcatatggtccaagtacacttcccaatccatttacattcattctg 742
Query: 543 ttactgaatgaaactatatttatttttaattgtatgattactttgcttctatatatgtat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttactgaatgaaactatatttatttttaattgtatgattactttgcttctatatatgtat 802
Query: 603 gcataccatctgcatgcctggtgtccttagagataagaagagggcatcagatcccctgaa 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gcataccatctgcatgcctggtgtccttagagataagaagagggcatcagatcccctgaa 862
Query: 663 actggagttatggatggttgtgagctaccatgta 696
||||||||||||||||||||||||||||||||||
Sbjct: 863 actggagttatggatggttgtgagctaccatgta 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_e19.g1 MSMg01no132_e19.g1 CHROMAT_FILE:
MSMg01no132_e19.g1 PHD_FILE: MSMg01no132_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:47 2005
(672 letters)
>mm_chrX_110137431_110138501
Length = 1071
Score = 1187 bits (614), Expect = 0.0
Identities = 663/692 (95%), Gaps = 21/692 (3%)
Strand = Plus / Minus
Query: 1 aacgctgccctggttttcacacgtacaccttgttcaaaaaaggaaaacaagacaaaatta 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 975 aacgctgccctggttttcacatgtacaccttgttcaaaaaaggaaaacaagacaaaatta 916
Query: 61 gagaagtctctctctctctctctctctctctctctctctctctctc-------------- 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 gagaagtctctctctctctctctctctctctctctctctctctctctctctctgtgtgtg 856
Query: 107 ------tgtgtgtgtgtgtgtgtgtgtgtgaagaaagtccagagaaccttctaacatttt 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagaaagtccagagaaccttctaacatttt 796
Query: 161 ttcttgtagactctaatttcctctgtgtgtgtcttgccttctcaaattgtttcctgcagt 220
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 795 ttcttgtagactctaatttcctctgtgtgcgtcttgccttctcaaattttttcctgcagt 736
Query: 221 agtagctgatctaagcttaaatattatgtttatatttcttaacagagaatttattactaa 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agtagctgatctaagcttaaatattatgtttatatttcttaacagagaatttattactaa 676
Query: 281 aattccaattagactcctagaaatgtctttaatgattagtttggactgtttgcttattcc 340
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 675 aattccaattagactcctagaaatgtctttaatgactagtttggactgtttgcttattcc 616
Query: 341 caaataacacatttaggcaacaggagtggataatctgactggaaaaaatctaaatccctc 400
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 615 caaataacacatttaggcaacaggagtggataatctgactggaaaaaatttaaatccctc 556
Query: 401 actatgcctgtgttcatacagagaaatcaacttgttagggaaggttcaactaccagaaga 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 actatgcctgtgttcatacagagaaatcaacttgttagggaaggttcaactaccagaaga 496
Query: 461 cataattatgtttgattgacaatactatgactgacacaatagagtatttccaaatttgta 520
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cataattatgtttgactgacaatactatgactgacacaatagagtatttccaaatttgta 436
Query: 521 atgtcataaagcaatatatgacaaaaactcaaaaaaatgacttcattctcaactatctga 580
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 435 atgtcataaggcaatatatgacaaaa-ctcaaaaaaatgacttcattctcaactatctga 377
Query: 581 atatccttgataaaatattgctagattttttcaaatagtaatcttcatataattttaaat 640
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atatccttgataaaacattgctagattttttcaaatagtaatcttcatataattttaaat 317
Query: 641 atatatttattttttgtgtgtatataatatgc 672
||||||||||||||||||||||||||||||||
Sbjct: 316 atatatttattttttgtgtgtatataatatgc 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 19
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
