BAC Information

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BAC

Clone NameMSMg01-132I17
ChromosomeX (Build37)
Map Location 132,881,890 - 132,882,218
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621352, EG331529, EG621380, EG666040, EG666045, AV320801, EG621467, Nxf7, 4930534P07Rik, 1700008I05Rik, 1700129I15Rik, Gprasp1, Gprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8, Tceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196
Downstream geneKir3dl2, LOC100041079, Kir3dl1, Tceal3, Tceal1, Morf4l2, BC065397, Glra4, LOC100041122, Plp1, Rab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132I17.T7 (MSMg01no132_i17.b1)MSMg01-132I17.TJ (MSMg01no132_i17.g1)
ACCAG339758AG339759
length740734
length of high quality
(start - end)		652 (43 - 694)665 (70 - 734)
definitionCHROMAT_FILE: MSMg01no132_i17.b1 PHD_FILE: MSMg01no132_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:05 2005CHROMAT_FILE: MSMg01no132_i17.g1 PHD_FILE: MSMg01no132_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGNAAATCCGCGGAAT
TCCAAGCCCATGGCCCGCTCAAGGACTTTCTAGGATATTGGAACACTGGC
GAAAGCTTAGCTATATCAGAATTCAATCTTAAAAATAACTTATAATAAGA
TAACACTAAAAGAGAGCATGTGGATCCATACACCAGACTAACGCGGGAAT
AGGGGATGAGTATATGGGTTAATGAGAAGGCCAAAACTCCAGAAGGTGAG
CTTCCGTGAAACTCTTTGCCTCATGAGTGCTTCCAGGCCTCTCGGCCTGT
CAAGCTGACTCGACTGGTGTGCGTGGCAGCAGTACCCATCCATGGTCTCT
GTATTAGCTCCTTCCTCTAGGTACCTGGCCCATTTCAGTTCCTGTTCTGT
CTGTCTTCAGATGATGAATAGCAATGAAGAAGTGTAAACCAAATAAGTCC
TACCCTCCCCAACTTGTGCTTGGGTTATAGTTTTTGGTGACAGCAATACA
AAGATTAACACATTCTACATTACATATGTGATGGCCTGTCTACAATCTGT
AGATCCAGTGAAGTTAGGTATAGAGGAAGGACTTGGGTGCATACATTGAT
GCCCATGGTATGGGGATATAGAATGGATTTTATTAGTGGACAAAGGTGGA
CAAGAAAGAGAAGATCAGGTGGCATAGGGGAGGGGAGATGGGGTTGAATA
AGGAAATGCTGGAAGATATACTTTGAATTAGTATAATTTG

TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAGAAGAAAGAACTTATGGCATAGCATTGA
GGCAATGACACAAGGAAATAATTAGATATTAGAAAGTGCCCCTGTGTTTC
TGAATGATGCAAGACTTTATTGCTGTGTAGCCAAAGGGAAACCGAAATCC
TTCAGAAAAATCAAAGAGAGGAGCCAAATAAACACCTTTCATCCAGCAAG
ATCAAAAACTGCTCTTAGAAAACTGGCAAGGTATGCAACAGGCAAACAAA
CTTTCTGTGTCAGTAAAGAAGGATCTTCACTTATAGCCTCAATTTTACAC
TTTCTTAGTGTATCAATTTCTATAAAACATGACCTCTCAAAGAATCAGTT
TAACTAAGGGTTTAATAAATCATTCTGTGCAACTATATACCGGCTGCATC
ATTGGACTCAAACTGAATGGTCCATGTGTTGCCACTGATGTGAGCCATTT
GCCTGTTGTCCTTCAGGAGAATTATATGACCTTCAACAAGCAATCCAAAT
ATGAAAAAGTAATAGGAACCTAACTCACTAACTGTGACAGACAAAGCAAT
TGTTTAAGGCCACAAGTGCTTTTTTCAGGATTCCAACTTTGTCTGTGTTC
TGAATCTAGTCAAACACAGATATAAGTATTTGAAATAAAACTTTCATTTG
TACTATAAAGAGATTACTAAAGTTCTGCCCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_i17.g1 MSMg01no132_i17.g1 CHROMAT_FILE:
MSMg01no132_i17.g1 PHD_FILE: MSMg01no132_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:05 2005
         (665 letters)



>mm_chrX_132881373_132882436
          Length = 1064

 Score =  250 bits (129), Expect = 4e-70
 Identities = 281/337 (83%), Gaps = 15/337 (4%)
 Strand = Plus / Plus

                                                                       
Query: 318 tcaaagaatcagtttaactaagggtttaataaatcattctgtgcaa-----ctatatacc 372
           |||||||||||  || ||||||||||| | ||||||||||||||||     ||     ||
Sbjct: 518 tcaaagaatcaacttgactaagggtttca-aaatcattctgtgcaattgtgct-----cc 571

                                                                       
Query: 373 ggctgcatcattggactcaaactgaatggtccatgtgttgccactgatgtgagccatttg 432
            || | ||||||||||| ||| ||||||| |||||||||| ||||  ||||||||||| |
Sbjct: 572 agcggaatcattggactgaaagtgaatggcccatgtgttgacacttctgtgagccattag 631

                                                                       
Query: 433 cctgttgt-ccttcaggagaattatatgacctt-caacaagcaatccaaatatgaaaaag 490
            || ||||  ||||||||||||||||||||||| ||| ||||  ||||||||||||||  
Sbjct: 632 actattgtggcttcaggagaattatatgaccttacaa-aagctttccaaatatgaaaatt 690

                                                                       
Query: 491 taataggaacctaactcactaactgtgacagacaaagcaattgtttaaggccacaagtgc 550
           | ||||||||| ||||  ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 691 ttataggaacccaacttgctaactgtgacagacaaagcaattgtttaaggccataggtgc 750

                                                                       
Query: 551 ttttttcaggattccaactttgtctgtgttctgaatctagtcaaacacagatataagtat 610
           |   ||||||| ||||| | |||||||||| ||||| |||||||||||||||| ||||||
Sbjct: 751 tacattcaggagtccaaatgtgtctgtgttttgaatgtagtcaaacacagataaaagtat 810

                                                
Query: 611 ttgaaataaaactttcatttgtactataaagagatta 647
           || ||||| ||||| ||| |||||| ||| |||||||
Sbjct: 811 ttaaaatacaacttgcatctgtactctaa-gagatta 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1064
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1054
Effective search space:   690370
Effective search space used:   690370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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