XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATGCGCGGAATTCCAG
TGTTTCCCAAGTTGGGACAGGGCATAAATAGTTGGTTCCTATGAAATGGC
GTTCAGCGAGGGAACAACAAGCACCCCTGAGCCAGGCCTTGGTGGAGGTT
TTCTGTGAGGAGGAAACGTCAAGTGAGCAGGAGGAGCAGGAGCTGGGGGC
TATGAAGCTGACCCTACCTCAAAGTTCACGGTGCTGTGGAAAGTTATCAT
TCACTGGCCTTTGCTTCATTTGTCTAATCTCTGGGGACTGCACACATACT
TGACAGATGAGATACCCCTGAGGAGGACCTGAAGCCGCCAGAGCAACACT
TATGAGCAGGAAGCCAGCATGCTTTCCAGTCATCCAGGAAACTAGATAGA
GCAGTATGCCTAAAGCGCTAGAATTGATCACACCTGTCCTCTTAGCCTTG
GCGCTTAATATCTCTGAATCTTGAGGAATTTTTTTTTCTCTACCTTTCAC
AATGCCCACCTAATAACTAAAAGAAACCTAGCAGGGCAACTAAAGCGCTT
CAGATCCACCCAGCTTATTTGAGAAACACCCTTTGATACAAGTAGTATCA
AGTACAAGTTGACTCGAGGATTATGGGCTCGCTGAAATCCCTGAAAGTGT
ATTCACAGTTTTACTACTTCTAACACGAGCATCTTTTAATACCTTTGCAT
TTT

GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCCTCGTGGCATGAGACTCAAGTTGGGCCAG
TCATTGGTTGGGAGCAGAAAGTGAGAGAATTGCTATAACTCTTTTTTATT
AGATATTTTCTTTATATACATTTTAAAATTCAAATGCTATCCCGAAAGTT
CACTATACCTTCCCCCCGCCCCCCACTCTGCTCCCCTACCCACCCATTCC
CGCTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAA
TACCAAGGGGCCTCTCTTCTCTATGATGGCCGACTAGGCCATCTTCTACT
ACATATGCATTTAGAGACACCACCTCTGGGGGTACTGGTTAGTTCATATT
GTTGTTCCACCTATTGGGTTGCAAACCCCTTCAGCTCCTTGGGAGCTTTC
TCTAGCTTCTCCATTGGGGACCCTGTGTTTCATCTTATAGATGACTGTGA
ACATCAATTTCAGTATTTGCCAGGCACTGGGATAGCCTCATATGAGACAG
CTATACCAGGGTCCTTTATAGACCGGAAAACTTGTGTGTCAAAGGTTTTG
TGGCTACATTGCTATTCCCATTTCTCCACTGTATATCTTGCCTGATTACA
AAAGGTGATTGTTTCATATTCCATTTCCCATATTGTTAGAAGTCTTATTG
TGGT

Query= MSMg01no132_j17.b1 MSMg01no132_j17.b1 CHROMAT_FILE:
MSMg01no132_j17.b1 PHD_FILE: MSMg01no132_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:10 2005
         (640 letters)



>mm_chrX_141851442_141852484
          Length = 1043

 Score = 1208 bits (625), Expect = 0.0
 Identities = 638/643 (99%), Gaps = 3/643 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttgggacagggcataaatagttggttcctatgaaatggcgttcagcgagggaacaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gttgggacagggcataaatagttggttcctatgaaatggcgttcagcgagggaacaacaa 784

                                                                       
Query: 61  gcacccctgagccaggccttggtggaggttttctgtgaggaggaaacgtcaagtgagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gcacccctgagccaggccttggtggaggttttctgtgaggaggaaacgtcaagtgagcag 724

                                                                       
Query: 121 gaggagcaggagctgggggctatgaagctgaccctacctcaaagttcacggtgctgtgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaggagcaggagctgggggctatgaagctgaccctacctcaaagttcacggtgctgtgga 664

                                                                       
Query: 181 aagttatcattcactggcctttgcttcatttgtctaatctctggggactgcacacatact 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 663 aagttatcattcactggcctttgcttcatttgtctaatctctggagactgcacacatact 604

                                                                       
Query: 241 tgacagatgagatacccctgaggaggacctgaagccgccagagcaacacttatgagcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgacagatgagatacccctgaggaggacctgaagccgccagagcaacacttatgagcagg 544

                                                                       
Query: 301 aagccagcatgctttccagtcatccaggaaactagatagagcagtatgcctaaagcgcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aagccagcatgctttccagtcatccaggaaactagatagagcagtatgcctaaagcgcta 484

                                                                       
Query: 361 gaattgatcacacctgtcctcttagccttggcgcttaatatctctgaatcttgaggaatt 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 483 gaattgatcacacctgtcctcttagccttggcccttaatatctctgaatcttgaggaatt 424

                                                                       
Query: 421 ttttttt--ctctacctttcacaatgcccacctaataactaaaagaaacctagcagggca 478
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tttttttttctctacctttcacaatgcccacctaataactaaaagaaacctagcagggca 364

                                                                       
Query: 479 actaaagcgcttcagatccacccagcttatttgagaaacaccctttgatacaagtagtat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 actaaagcgcttcagatccacccagcttatttgagaaacaccctttgatacaagtagtat 304

                                                                       
Query: 539 caagtacaagttgactcgaggattatgggctcgctgaaatccctgaaagtgtattcacag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 caagtacaagttgactcgaggattatgggctcgctgaaatccctgaaagtgtattcacag 244

                                                      
Query: 599 ttttac-tacttctaacacgagcatcttttaatacctttgcat 640
           |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttttacgtacttctaacacgagcatcttttaatacctttgcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1043
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1033
Effective search space:   650790
Effective search space used:   650790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)