BAC Information

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BAC

Clone NameMSMg01-133H04
ChromosomeX (Build37)
Map Location 139,466,283 - 139,466,428
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235, Tmem164, Ammecr1
Downstream geneRgag1, LOC209541, Chrdl1, Pak3, Capn6, Dcx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133H04.T7 (MSMg01no133_h04.b1)MSMg01-133H04.TJ (MSMg01no133_h04.g1)
ACCAG340425AG340426
length730707
length of high quality
(start - end)
73 (40 - 112)241 (74 - 314)
definitionCHROMAT_FILE: MSMg01no133_h04.b1 PHD_FILE: MSMg01no133_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:16 2005CHROMAT_FILE: MSMg01no133_h04.g1 PHD_FILE: MSMg01no133_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAAT
TCATCAGCTCACTAAAAACACAATCTACTCTAGTTAAGGTGGGAATAATT
CCTAAAGTATAAGTTCTTGCTAATATACGTGGCAAAAAAACTATATACAC
ATGGGAACACCATACTTGTATTTCGTGTTAGAATAATTAATATCTCAAAA
TAGCTCTTATTATCATAAGGGCACAGATAGTTAAACACACAAGTCTATAA
ATATAATATTATGTTAACAGAATAAAGGACAAAAGTCGCATCAATAATAT
TAGTTACAGATAACTTTCATGATTTTAATACACAGCTCAACTAATTTATA
TATAGAAGGAATTTTTTCTTTCCCCCCCCCCCCCTTAATATGAATTCATT
AGCTACGGCTTCGTGCCCACTTAATAATAAAAAAACTTGTCCGAGAGGAG
TCCGGCCAATATTGGCCAAATCGACCTGTACTTACACCTTCCCCTAATTA
TATACCCCCCAAATACTTTACCCTTTTCTTTTGACCTGACGCAGTAGACT
CCCGCCCTCGCTTGTCTATATATCCAATCTTACTTTCCAGCTATATCTGT
TACCCGTTTTCTACTCTATCCCCTCTGCTTTATCCATATTTCATTCGCTA
TTGGTAACCCTATTTCCTCCCTTATCATTTAAATATTCCCTACACATATA
CCCAAAGTTAACCTCCGTTTCATACCCTAA
CGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATATTGATTACACATTTGAAATAATGT
GTCTAAAAAATGACAATGTGAATTGTCAGGCAATTATTCGTCTATCAGCT
CAAATGTATGTGGAAGAAAAAGAATCCCAAACTCAAAATACAGTAAAAGA
TTAAGAGCCAAGAACTCTTTTTTTTTTTTTTTAAGATTTATTTATTTATT
TATTTATTATATGTAAGTACACTGTAGCTGCCTTCAGATGCACCAGAAGA
GGGCATCAGATCTCATTACGGCTGGTTGTGAGCCACCATGTGGTTGCTGG
GATTTGAACTTCGGACCTTCGGAAGAGCAGTCGGGTGTTCTTACCCACTG
AGCCATCTCACCAGCCCGAGCTAAGAACTCTTAAGGAGCTAAAACTCTTA
CATTACTCTCTCCACGACGACGCATGCTGAAATTCCTCTTGAGCACGCGT
CGTATTGGAAACCTATTTTACGCCATTACACCTGTAGGATATCGAAAAGG
CCTGCGGTTCACACCATGTGACTCGACTGTCATGTCATCAGACTTCTCAT
TCACCTCTGATTGCCTGCCACACGTCCGACTCTTAAAGGGCCCCTGAAAT
TTGACTCTACATGTTCCTTTCGTGTCAACGGCACTCACCCTCCTCGGTTC
CATACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_h04.g1 MSMg01no133_h04.g1 CHROMAT_FILE:
MSMg01no133_h04.g1 PHD_FILE: MSMg01no133_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:16 2005
         (241 letters)



>mm_chrX_139466083_139466723
          Length = 641

 Score =  282 bits (146), Expect = 1e-80
 Identities = 146/146 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgattacacatttgaaataatgtgtctaaaaaatgacaatgtgaattgtcaggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattgattacacatttgaaataatgtgtctaaaaaatgacaatgtgaattgtcaggcaa 260

                                                                       
Query: 61  ttattcgtctatcagctcaaatgtatgtggaagaaaaagaatcccaaactcaaaatacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattcgtctatcagctcaaatgtatgtggaagaaaaagaatcccaaactcaaaatacag 320

                                     
Query: 121 taaaagattaagagccaagaactctt 146
           ||||||||||||||||||||||||||
Sbjct: 321 taaaagattaagagccaagaactctt 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)