BAC Information

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BAC

Clone NameMSMg01-134L12
ChromosomeX (Build37)
Map Location 141,611,933 - 141,612,231
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
Downstream geneLOC623591, Lhfpl1, Amot, EG434860, LOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134L12.T7 (MSMg01no134_l12.b1)MSMg01-134L12.TJ (MSMg01no134_l12.g1)
ACCAG341365AG341366
length1,1851,120
length of high quality
(start - end)
300 (464 - 763)---
definitionCHROMAT_FILE: MSMg01no134_l12.b1 PHD_FILE: MSMg01no134_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:24 2005CHROMAT_FILE: MSMg01no134_l12.g1 PHD_FILE: MSMg01no134_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATATTNNNNNNNATCAGTGGGCGCTATAGACTACTATAGGGAGAGGAT
CCGCGGAATTCTATTTTCACACACAACATTTGAAAACTTGGTCTCTAATG
GCTCTTAGCTATATATCTTTGAAACTGGTTCTTCAAANTTTAATTTCAAG
GAAGATCTTAAAAATGATGCAAATACCTCAATTATAAGTCACAGGAATAG
GGTCAATGGTAGGTGGGTAATAGAGGAGAATCTCTTTAAGAAAAATATCC
TGCAGACTTTAAGTTAAGCCTGGTTGGACACTTGAAAAAGGAAGGAAGTA
TTAATCTATACTGGGTTATAAATTCCCACAAGGTGAAACTGTGTTACAAT
GTGAATTCAGTCTCTGGGTCTAAGGCACACCGAGTATATTAACTTTACCC
ACTGTTATTTATATGACTTTTTTGCAAAGAAGGAATAAAGAATCACAAAG
TTGATTTTTTGCCTCCAATGTACCTATTGCTGGGTTCATAATTCTCTAAA
ATCACCTTAAGAAATATAGGTCACAAACATTCAGTAAGCCAACAGAACAC
ATGCTTACTCTTCAAAGAATGTAGCTATCAAGATGGACATTTCATTTTTT
ATAATTTTGGGTTTTTTTATATTTATCATTAGGAACATGATTATTCAAAT
CAGCATTTTCACTCAAAGATACTTTTACCCCTTATCGTCAATAATGGTAT
GTATCCTTTAAAGATGCAAATCAAACATCTTTTCTCCATATGATTAATTT
ATACACTTCTTGGAATCTCTTGTGTTTTACTTATTNNNNNNNNNNNNNNN
NNNNNTTTTTAGGNTTTTNAAATCCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGNNNNNCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CGTTTTTNTTNNAAGATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGCCTTCAGGCTCTCCNGNNANNGGNNNGGA
GNNGGANNNNCCCTTAAAAACCCCNGGNNNAGANANNNNNNNANNGAAGA
GGNNAGGGAAAGGGNNNAAGNAAAGNANNNGGACTTAAGAGGGANACCCA
GNNANANNAAGGGGNNCANAGGNNCGCAAANNCNNCCAAGGGAGCGGAGC
GGCNAGNAACGGGGAGAGCAACNAACNNCCCGGCNNCGGCNCNCNNNNCN
NCAGGCCAACAAGAGGGGNACAAGGGNCTAAGAAAGCAGCAAACCNCAGG
ACANNNANNGGAAANCNANGGCNNNNCNNCNAAGACNNCNGGNGCATTTT
TTTTTCCNNCNCNNNANNNNANNNNAANNGGAGAAAAAAAAGACCCACCC
CCTCNNNCCCACCCNCNCCNAGCAGGAGCAGCCAAAAAAAGAGGAAGCCN
NNNNNNNNNNAANAAGAGNCGGGGANNNAAAACAGCNNNCNNNAANAGGC
CGGCANNNNNNAAGGGAGGGAAAGGANANNAAGNACANNNNNNCNNCCGG
AAACGGGANANGCAAGAACNNCAGGCNACGGNGAAANACNANAGGGCANA
NNCANGGAANNNNACCCANNNNACCNNNGGAGGAGGAAAAAAANCNAGAN
AGGAACCAACCCCAGACAGAGAGGCGGGGAGNNNACNNANANANACNCCA
NAAGGAAGTTAGNANNAAACCCNNCAGAAAANACAGNAGGAAGAGANNAN
CGGGGACAAAAGAAAGAAGGACCCCCAAGGGAAAAAGGCCAGGCCAGGGA
GGCCCCACGGAAAGCAAGACCCGAANNAAACCCCACAAACAAAACAAGGA
GGNAGGACCCAANNNNAAGGGGAACCAACCGGGAAANAAACAAGAAAAAA
AAGGAAAGAGAGAGAAGGAAGGGAAAAGAGGGAAGNGAAGGAAGAGGGAC
GGGCAAAAAGAACCCCACAGGGGAACGAAGAAGGGGGCACAACAAGCAAC
GGAAAAGAGACAAAAACCGGGAACCGAAAAAGGGAAAAAGGAGGGGACAA
AACGAGGGGAGAGAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_l12.b1 MSMg01no134_l12.b1 CHROMAT_FILE:
MSMg01no134_l12.b1 PHD_FILE: MSMg01no134_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:24 2005
         (300 letters)



>mm_chrX_141611733_141612431
          Length = 699

 Score =  549 bits (284), Expect = e-161
 Identities = 296/300 (98%), Gaps = 1/300 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaatgtacctattgctgggttcataattctctaaaatcaccttaagaaatataggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaatgtacctattgctgggttcataattctctaaaatcaccttaagaaatataggtca 260

                                                                       
Query: 61  caaacattcagtaagccaacagaacacatgcttactcttcaaagaatgtagctatcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaacattcagtaagccaacagaacacatgcttactcttcaaagaatgtagctatcaaga 320

                                                                       
Query: 121 tggacatttcattttttataattttgggtttttttatatttatcattaggaacatgatta 180
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 321 tggacatttcattttttataattttgggtttttt-atatttatcattaggaacatgataa 379

                                                                       
Query: 181 ttcaaatcagcattttcactcaaagatacttttaccccttatcgtcaataatggtatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 ttcaaatcagcattttcactcaaagatacttttaccccttatcgtcagtaatggtatgta 439

                                                                       
Query: 241 tcctttaaagatgcaaatcaaacatcttttctccatatgattaatttatacacttcttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 tcctttaaagatgcaaatcaaacatcttttctccatatgattaatttatacactttttgg 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 699
Length adjustment: 9
Effective length of query: 291
Effective length of database: 690
Effective search space:   200790
Effective search space used:   200790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)