BAC Information

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BAC

Clone NameMSMg01-135O19
ChromosomeX (Build37)
Map Location 96,210,117 - 96,340,874
singlet/doubletdoublet
Overlap geneStard8, LOC436219, Efnb1
Upstream geneAr, LOC100042324, Ophn1, Yipf6, LOC100042932
Downstream genePja1, LOC100042947, Pcna-ps1, EG620592, Eda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135O19.T7 (MSMg01no135_o19.b1)MSMg01-135O19.TJ (MSMg01no135_o19.g1)
ACCAG342260AG342261
length711716
length of high quality
(start - end)		613 (46 - 658)553 (76 - 628)
definitionCHROMAT_FILE: MSMg01no135_o19.b1 PHD_FILE: MSMg01no135_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:09 2005CHROMAT_FILE: MSMg01no135_o19.g1 PHD_FILE: MSMg01no135_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,210,117 - 96,210,725)(96,340,322 - 96,340,874)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTACCACAGGTAGACACTGGATTTGTCTTGGCCTCTTGAA
TATCTACTTTCATAGGCCTATACCACCAGGCTCTCCTCTACTTATCTTGT
GAACAAGCTTGAATTTTATTATACTCATGATGAATTAATTGGGCCAGTAG
TAGGATAGGGTAGGAGGGGCTTCATGAGACTAGAAGAGGACTGCAGAGTA
GCTGTCTGTCCCAACTGTTAGCCCACTTCCTAATTTCCCAGAATTGACCT
CATGGGCCCCTTCTTTGTCTCTTCTTCCACCCATTTGTCCTTCTCATTCT
TATCTCCCCTTTATCCACCATTGACAATTATATTGTCTTGCTCACTTATA
GCTCCACCTTGTAGCTTTTTCAGAGAACTTTCATATCTGTCTCTCTCTGA
GCACGCTTCTCTGATGCTTGAACTTTCTGTCTATCTCACAAACATTTTTA
AGAGGTGATAAATGAACAATAAACTGAATATGCTTCCAATCCCTTCTTTT
CCATGTGGTCAAATGTGTTCTTTGAGCAGAGACTTGGCTTGTAGCTCTTC
TACGGTGATCTAGGTTGGAGACAAGTATTCCTAAGATTAGGTGTCATTGG
GACTAAGTGTCTGTATCAGGCGTGGTCATCATTGTCCTGAGGGTAAGAGA
CCTGGTACCTN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCCATGTAGTTGGGGCTGAAC
TCTTGGAACTTGATGGTGAAGCGGATTTCCTGGTGTGGCTTGTTGCAAGT
GACCAGTACATTGGGATCAAGCACAGTGCTGCAAGCAGCCGCCTGCTCTG
GCCGCACCAGGTACAGCTTGTAGTACTCGTAGGGCCGCCCTGCTTCTGCT
CGGGGGCAGATGATGTCCAGCTTGTCTCCAATCTTCGGGTAGATCACCAA
GCCCTTCCCACTTAGGAACCTGCCCAGAAGAAAGAAAATGGTCAATGTCA
AGGTTGGGAGCTCTGGCTATCTCAGGACCAGGTGCTATGACAGTGAAGGC
CAGGCTAGTCCTACCGGGTGGAGCTATCAAATCGACCTTCTGCCCTTCCT
CTATCCTTGGGCTGGGGGTGGGGAGAGAGAACCATACTGCCAGCAGGGTG
TGGAAGGGGTGGCCCATAGGCAAGGCTGCCAGGCTTTCGGTGCTTGGCAG
GGTGGGGCAATGCCTGGCTAGGGGAGCCCTTTGTCCTAATGNGGCATTTC
CGCAGGGGGGCTGACGTGGCCAAATGGGCCAGGTACCCATGTGTCAGGCC
CAGACTACCTGGAGGAGGAGCCCTGTTTCCCATACTTCCCAAAACATTCC
CATTTCTTTCAAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_o19.b1 MSMg01no135_o19.b1 CHROMAT_FILE:
MSMg01no135_o19.b1 PHD_FILE: MSMg01no135_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:09 2005
         (613 letters)



>mm_chrX_96209913_96210925
          Length = 1013

 Score = 1123 bits (581), Expect = 0.0
 Identities = 602/609 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctgtaccacaggtagacactggatttgtcttggcctcttgaatatctactt 64
           |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactctgtagcacaggcagacactggatttgtcttggcctcttgaatatctactt 264

                                                                       
Query: 65  tcataggcctataccaccaggctctcctctacttatcttgtgaacaagcttgaattttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcataggcctataccaccaggctctcctctacttatcttgtgaacaagcttgaattttat 324

                                                                       
Query: 125 tatactcatgatgaattaattgggccagtagtaggatagggtaggaggggcttcatgaga 184
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 catactcatgatgaattaattgggccagtagtaggatagggtatgaggggcttcatgaga 384

                                                                       
Query: 185 ctagaagaggactgcagagtagctgtctgtcccaactgttagcccacttcctaatttccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagaagaggactgcagagtagctgtctgtcccaactgttagcccacttcctaatttccc 444

                                                                       
Query: 245 agaattgacctcatgggccccttctttgtctcttcttccacccatttgtccttctcattc 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 agaattgacctcatgggccccttctttgtcccttcttccacccatttgtccttctcattc 504

                                                                       
Query: 305 ttatctcccctttatccaccattgacaattatattgtcttgctcacttatagctccacct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttatctcccctttatccaccattgacaattatattgtcttgctcacttatagctccacct 564

                                                                       
Query: 365 tgtagctttttcagagaactttcatatctgtctctctctgagcacgcttctctgatgctt 424
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 tgtagctttttcagagaactttcatatctgtctctttctgagcacgcttctctgatgctt 624

                                                                       
Query: 425 gaactttctgtctatctcacaaacatttttaagaggtgataaatgaacaataaactgaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaactttctgtctatctcacaaacatttttaagaggtgataaatgaacaataaactgaat 684

                                                                       
Query: 485 atgcttccaatcccttcttttccatgtggtcaaatgtgttctttgagcagagacttggct 544
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgcttccaatcccttctttttcatgtggtcaaatgtgttctttgagcagagacttggct 744

                                                                       
Query: 545 tgtagctcttctacggtgatctaggttggagacaagtattcctaagattaggtgtcattg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtagctcttctacggtgatctaggttggagacaagtattcctaagattaggtgtcattg 804

                    
Query: 605 ggactaagt 613
           |||||||||
Sbjct: 805 ggactaagt 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no135_o19.g1 MSMg01no135_o19.g1 CHROMAT_FILE:
MSMg01no135_o19.g1 PHD_FILE: MSMg01no135_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:09 2005
         (553 letters)



>mm_chrX_96340122_96341074
          Length = 953

 Score = 1064 bits (550), Expect = 0.0
 Identities = 552/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcccatgtagttggggctgaactcttggaacttgatggtgaagcggatttcctggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 caggcccatgtagttggggctgaactcttggaacttgatggtgaagcggatttcctggtg 694

                                                                       
Query: 61  tggcttgttgcaagtgaccagtacattgggatcaagcacagtgctgcaagcagccgcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tggcttgttgcaagtgaccagtacattgggatcaagcacagtgctgcaagcagccgcctg 634

                                                                       
Query: 121 ctctggccgcaccaggtacagcttgtagtactcgtagggccgccctgcttctgctcgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctctggccgcaccaggtacagcttgtagtactcgtagggccgccctgcttctgctcgggg 574

                                                                       
Query: 181 gcagatgatgtccagcttgtctccaatcttcgggtagatcaccaagcccttcccacttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gcagatgatgtccagcttgtctccaatcttcgggtagatcaccaagcccttcccacttag 514

                                                                       
Query: 241 gaacctgcccagaagaaagaaaatggtcaatgtcaaggttgggagctctggctatctcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaacctgcccagaagaaagaaaatggtcaatgtcaaggttgggagctctggctatctcag 454

                                                                       
Query: 301 gaccaggtgctatgacagtgaaggccaggctagtcctaccgggtggagctatcaaatcga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaccaggtgctatgacagtgaaggccaggctagtcctaccgggtggagctatcaaatcga 394

                                                                       
Query: 361 ccttctgcccttcctctatccttgggctgggggtggggagagagaaccatactgccagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccttctgcccttcctctatccttgggctgggggtggggagagagaaccatactgccagca 334

                                                                       
Query: 421 gggtgtggaaggggtggcccataggcaaggctgccaggctttcggtgcttggcagggtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gggtgtggaaggggtggcccataggcaaggctgccaggctttcggtgcttggcagggtgg 274

                                                                       
Query: 481 ggcaatgcctggctaggggagccctttgtcctaatgnggcatttccgcaggggggctgac 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 273 ggcaatgcctggctaggggagccctttgtcctaatggggcatttccgcaggggggctgac 214

                        
Query: 541 gtggccaaatggg 553
           |||||||||||||
Sbjct: 213 gtggccaaatggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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