BAC Information

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BAC

Clone NameMSMg01-136D20
ChromosomeX (Build37)
Map Location 142,442,085 - 142,627,154
singlet/doubletdoublet
Overlap geneLOC237096, LOC100039558
Upstream geneZcchc16, LOC623591, Lhfpl1, Amot, EG434860, LOC100039313, LOC623697, LOC623731
Downstream geneEG666730, EG245663, Htr2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136D20.T7 (MSMg01no136_d20.b1)MSMg01-136D20.TJ (MSMg01no136_d20.g1)
ACCAG342495AG342496
length721713
length of high quality
(start - end)		671 (51 - 721)643 (71 - 713)
definitionCHROMAT_FILE: MSMg01no136_d20.b1 PHD_FILE: MSMg01no136_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:33 2005CHROMAT_FILE: MSMg01no136_d20.g1 PHD_FILE: MSMg01no136_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,442,085 - 142,442,751)(142,626,514 - 142,627,154)
sequence
NNNNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTCCTTCGCCCTTAGGGCTGTCCTGAAGTTCCCGTTGT
TAACCATTTTGCTGAGACATTAGCTAAACCTTGCCTCCTGAACTCACGTT
GTCTTTGATATGCATGGTTATCATGAAGTCATTAATGTTGACAGGAATGA
CATTCCTTGGAGGAACATAAAATATGTACAGTAATACACAAACAAGCATT
ACAATAGTCATTAACACTCATGGAGGCCCATGCCTGCTGGCCCTGTCCCA
GGGGCAGGAGCCATGTCACTCTGTCCCCACCAAGGCTATGCTGGAACTGG
CACTATGGAATGTGCTGATAAAGTAAAAAAAAAAAAAAAAAGATTTACAT
AAGGAATCCAGACATTATCAAGAGTCAGGCTTGGAAAAATAGTGTCTGTG
TCTAGACGTCACTGATGGCACATGAGTTTATACTAGTCTAAGAGTGTTTC
TTTATACAGTGGCCTGGTTTCTCTAGAAGCCATATTTCTGTGAAGCTTTC
ATCATTAAGATATCAGAATATATCTAAAAATGTTTTCTTTCTTTGAATCC
CAAACTATTTTGAATAGTAAATAATTTTCCGTCTCTCTCTAATATGTTAA
AAAAAACTTATGATGTGCAGATTTGTATATATTGAACAATTTTTACTTTT
TAAATTATTTACTTTTGCTTT

NNCCCGATGCTAGGGGAGGCTGGCGGCCGCTGTTCACAAATTGAGGTGAC
CTATAGAATGCCCGCGGAATCACTCTGGCCTGGAACTCAGAGATCCACCT
GCCTGTGCCTCCCAAGCACTAGGATTAAAGGCATGGCCTGGCCAATTTTG
CTCTTTCATAATCCAGTATTCTAATAATTTTTTATTTTAATCTTCTGGCC
TGAGATTTTATGGGATATTTCCACCTGAGCAGAACACTTGAAGACAAAGA
ACAACAGAATTCTGATGATTTTGTTCCCATGTATAAACAAGTGATGATAA
TTAACTGTTCATAGAATATGCCTAAAAATGATCTAAATATATAACATTCA
ACCTTACTTTATGGGGTCAATAAATGGACAAGTCATTTTGGCACTCATTC
TTTAAGAATATCACTTTGCCTCTTTTCAATCATATTTATAAATTCCATAA
GTTATTTTGAAAATGCAAAATCAATACGACATCATTCCTTCAATTATTCA
GAAGAAACAGATACATGCCAAAAAGGAATGGCATGCCAATTTGTGTTATT
CTGAATAATATCCACCCACATAGATTATATAATTTATCTAAGACTGAAGT
TTGGATTCTTATGAAAGCTTGCTCATATCCTCTTCACAGTTTCTAATTAC
AAAGTCAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_d20.b1 MSMg01no136_d20.b1 CHROMAT_FILE:
MSMg01no136_d20.b1 PHD_FILE: MSMg01no136_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:33 2005
         (671 letters)



>mm_chrX_142441881_142442951
          Length = 1071

 Score = 1236 bits (639), Expect = 0.0
 Identities = 660/667 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttccttcgcccttagggctgtcctgaagttcccgttgttaaccattttgctg 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttccatagcccttagggctgtcctgaagttcccgttgttaaccattttgctg 264

                                                                       
Query: 65  agacattagctaaaccttgcctcctgaactcacgttgtctttgatatgcatggttatcat 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 agacattagctaaaccttgcctcctgaactcatgttgtctttgatatgcatggttatcat 324

                                                                       
Query: 125 gaagtcattaatgttgacaggaatgacattccttggaggaacataaaatatgtacagtaa 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagtcattaatgttgacagggatgacattccttggaggaacataaaatatgtacagtaa 384

                                                                       
Query: 185 tacacaaacaagcattacaatagtcattaacactcatggaggcccatgcctgctggccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacacaaacaagcattacaatagtcattaacactcatggaggcccatgcctgctggccct 444

                                                                       
Query: 245 gtcccaggggcaggagccatgtcactctgtccccaccaaggctatgctggaactggcact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtcccaggggcaggagccatgtcactctgtccccaccaaggctatgctggaactggcact 504

                                                                       
Query: 305 atggaatgtgctgataaagtaaaaaaaaaaaaaaaaagatttacataaggaatccagaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atggaatgtgctgataaagtaaaaaaaaaaaaaaaaagatttacataaggaatccagaca 564

                                                                       
Query: 365 ttatcaagagtcaggcttggaaaaatagtgtctgtgtctagacgtcactgatggcacatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttatcaagagtcaggcttggaaaaatagtgtctgtgtctagacgtcactgatggcacatg 624

                                                                       
Query: 425 agtttatactagtctaagagtgtttctttatacagtggcctggtttctctagaagccata 484
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtgtatactagtctaagagtgtttctttatacagtggcctggtttctctagaagccata 684

                                                                       
Query: 485 tttctgtgaagctttcatcattaagatatcagaatatatctaaaaatgttttctttcttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttctgtgaagctttcatcattaagatatcagaatatatctaaaaatgttttctttcttt 744

                                                                       
Query: 545 gaatcccaaactattttgaatagtaaataattttccgtctctctctaatatgttaaaaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaatcccaaactattttgaatagtaaataattttccgtctctctctaatatgttaaaaaa 804

                                                                       
Query: 605 aacttatgatgtgcagatttgtatatattgaacaatttttactttttaaattatttactt 664
           | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atcttatgatatgcagatttgtatatattgaacaatttttactttttaaattatttactt 864

                  
Query: 665 ttgcttt 671
           |||||||
Sbjct: 865 ttgcttt 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no136_d20.g1 MSMg01no136_d20.g1 CHROMAT_FILE:
MSMg01no136_d20.g1 PHD_FILE: MSMg01no136_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:33 2005
         (643 letters)



>mm_chrX_142626304_142627346
          Length = 1043

 Score = 1216 bits (629), Expect = 0.0
 Identities = 638/641 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctggcctggaactcagagatccacctgcctgtgcctcccaagcactaggattaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 cactctggcctggaactcagagatccacctgcctgtgcctcccaagcactaggattaaag 792

                                                                       
Query: 61  gcatggcctggccaattttgctctttcataatccagtattctaataattttttattttaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 791 gcatggcctggccaattttgctctttcataatccagtattctaatagttttttattttaa 732

                                                                       
Query: 121 tcttctggcctgagattttatgggatatttccacctgagcagaacacttgaagacaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tcttctggcctgagattttatgggatatttccacctgagcagaacacttgaagacaaaga 672

                                                                       
Query: 181 acaacagaattctgatgattttgttcccatgtataaacaagtgatgataattaactgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 acaacagaattctgatgattttgttcccatgtataaacaagtgatgataattaactgttc 612

                                                                       
Query: 241 atagaatatgcctaaaaatgatctaaatatataacattcaaccttactttatggggtcaa 300
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 611 atagaaaatgcctaaaaatgatctaaatatatatcattcaaccttactttatggggtcaa 552

                                                                       
Query: 301 taaatggacaagtcattttggcactcattctttaagaatatcactttgcctcttttcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 taaatggacaagtcattttggcactcattctttaagaatatcactttgcctcttttcaat 492

                                                                       
Query: 361 catatttataaattccataagttattttgaaaatgcaaaatcaatacgacatcattcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 catatttataaattccataagttattttgaaaatgcaaaatcaatacgacatcattcctt 432

                                                                       
Query: 421 caattattcagaagaaacagatacatgccaaaaaggaatggcatgccaatttgtgttatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caattattcagaagaaacagatacatgccaaaaaggaatggcatgccaatttgtgttatt 372

                                                                       
Query: 481 ctgaataatatccacccacatagattatataatttatctaagactgaagtttggattctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctgaataatatccacccacatagattatataatttatctaagactgaagtttggattctt 312

                                                                       
Query: 541 atgaaagcttgctcatatcctcttcacagtttctaattacaaagtcagagagagagaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atgaaagcttgctcatatcctcttcacagtttctaattacaaagtcagagagagagaaag 252

                                                    
Query: 601 agagagagagagagagagagagagagagagagagagagaga 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agagagagagagagagagagagagagagagagagagagaga 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 18
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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