GTTTTNNNATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTCAGTTCTGAGTCCCATCTTTTAAGGGGGTTA
TTTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATAT
TAGTCCTCTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGATGGTATCTTTTCCCTTGCAGAAGCTTTGC
AGTTTCATGAGGTCCCATTTGTCAATCCTTGATCTTACAGCACAAGCCAT
TGCTGTAAGATCGCTGGAATTTTTTCCCTGTGCCCATATCTTCGAGACTT
TTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAG
TTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGAGAGGAATGGGT
CAATTCACATTCTTCTACATGATAACAACCACTTGTGCCAGCACCATTTG
TTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTTGAA
GATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTTAATTCTAT
TCCATTGGTCTACTTATTATGTTCGTGTGACCCCCACCCCATAATTCTTT
CAAGTGGTTTCCACATAAACAGCAATCGAGCAAGTGTTCCA

AACAANNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAAGAAACAAAAAA
GAAAAAAAAAGAAAAGAAAAGAAAAGAAGAGAAAAAGGAAAAAAGAAAAA
AGAAAAAGAAACAGGACCAGGGAACTGAAGATGGAAGAACTCAGATAATG
GGTCCAAGATAATATTTAACCATGCTCTGCAAACATTAGTGTTATTTCTC
TTAGAAAGTTAAAAAGTATATAAACAGCAGTGGGGAAAATAAATATTGTT
AATTCTTGATGTGATCCCAGAGTCTTCTGACTATGTTCATATTACCCTCC
TTTCCAGCTCCCTTTAATGCCAATGGATGTGGTGGCTGAAGAATAGAATC
TTAAGTTAGTCTGTGTGGGTTTTTTTGTTGTTGTTTGTTAAAATTGTGAA
TATATTTTATTTAATTTTTTCCAAAATTTTTTTAGGTAGTTACTTCATTT
ACATTTCAAATGCTATCCCGAAAGTCCCCTATACCCCCCCTGCCGCACCC
TTACCCACCCACTCCCACTTCTTAACCCTGGTGTTTCCCCTGTACTGGGG
CATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAATGATGGCTGAC
TAGGCCATCTTCTGCTAAAAATGCAGCTAGAGACACAAGCTCTGAG

Query= MSMg01no136_k20.g1 MSMg01no136_k20.g1 CHROMAT_FILE:
MSMg01no136_k20.g1 PHD_FILE: MSMg01no136_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:08 2005
         (613 letters)



>mm_chrX_111281465_111282477
          Length = 1013

 Score = 1069 bits (553), Expect = 0.0
 Identities = 603/631 (95%), Gaps = 21/631 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaagaaacaaaaaagaaaaa----aaaagaaaagaaaagaaaagaag---------- 46
           |||||| |||||||| |||||||    |||||||||||||||||||||||          
Sbjct: 661 catgaaaaaacaaaagagaaaaaaaataaaagaaaagaaaagaaaagaagagaaaaagga 602

                                                                       
Query: 47  ----agaaaaaggaaaaaagaaaaaagaaaaagaaacaggaccagggaactgaagatgga 102
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaaaagaaaaaggaaaaaagaaaaaagaaaaagaaacaggaccagggaactgaagatgga 542

                                                                       
Query: 103 agaactcagataatgggtccaagataatatttaaccatgctctgcaaacattagtgttat 162
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 541 agaactcagataatgggtccaagataatatttaaccatgttctgcaaacattagtgttat 482

                                                                       
Query: 163 ttctcttagaaagttaaaaagtatataaacagcagtggggaaaataaatattgttaattc 222
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 481 ttctcttagaaagttataaagtatataaacagcagtggggaaaataaatattgttcattc 422

                                                                       
Query: 223 ttgatgtgatcccagagtcttctgactatgttcatattaccctcctttccagctcccttt 282
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 421 ttgatgtgatcccagagtcttctgactatgttcatattaccctcctttccagctccctgt 362

                                                                       
Query: 283 aatgccaatggatgtggtggctgaagaatagaatcttaagttagtctgtgtgggtttttt 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgccaatggatgtggtggctgaagaatagaatcttaagttagtctgtgtgggtttttt 302

                                                                       
Query: 343 tgttgttgtttgttaaaattgtgaatatattttatttaattttttccaaaatttttttag 402
           |||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||
Sbjct: 301 tgttgttgtttgttaaaattgtgaatatattttatttaattttt-ccaaa--ttttttag 245

                                                                       
Query: 403 gtagttacttcatttacatttcaaatgctatcccgaaagtcccctataccccccctgccg 462
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtatttacttcatttacatttcaaatgctatcccgaaagtcccctataccccccctgccg 185

                                                                       
Query: 463 cacccttacccacccactcccacttcttaaccctggtgtttcccctgtactggggcatat 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cacccttacccacccactcccacttcttaaccctggtgtttcccctgtactggggcatat 125

                                                                       
Query: 523 aaagtttgcaataccaaggggcctctcttcccaatgatggctgactaggccatcttctgc 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaagtttgcaataccaaggggcctctcttcccaatgatggctgactaggccatcttctgc 65

                                          
Query: 583 taaaaatgcagctagagacacaagctctgag 613
           |||||||||||||||||||||||||||||||
Sbjct: 64  taaaaatgcagctagagacacaagctctgag 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)