BAC Information

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BAC

Clone NameMSMg01-137G09
ChromosomeX (Build37)
Map Location 129,749,675 - 129,750,073
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665846, LOC665850, LOC665854
Downstream geneLOC100040794, Pcdh19, LOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137G09.T7 (MSMg01no137_g09.b1)MSMg01-137G09.TJ (MSMg01no137_g09.g1)
ACCAG343338AG343339
length720714
length of high quality
(start - end)
400 (67 - 466)238 (76 - 313)
definitionCHROMAT_FILE: MSMg01no137_g09.b1 PHD_FILE: MSMg01no137_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:04 2005CHROMAT_FILE: MSMg01no137_g09.g1 PHD_FILE: MSMg01no137_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGGCGCGG
AATTCTATTGTTTCCTTCAATTAAATCCAATAATATGACATACTTTCCAT
TATGAGTTTTTCATATTTATATATTTAATACTCTCTTCTAAGAAAATTTT
CTGTCATAATTATATTAATATAGCTGATAAAATCCTCAAGATGTGGTTAC
TCTCCATCAGTATAGTTCTATCCCATCCTATATTTAATTGTTTCTTTCCC
AGCTGAATGTAAATTCCAATTCGTTTGCAACTTTTGCTGATCTATAGCTA
CTCTGCAAATATTTTAACCTTGTCTTCATCTCAGCATGTTTCAATATCAC
ACATTGAGCCATAAACTCTGTGTGGATTTCCTAATTACTCCAAAGAGGTT
ATACTATACAATAAGCGTCTACTCCCTGGATAGTTGATCATTTCATTTGA
TTTCAGCTCTGACACCACATAGCATGTAACTTTTCTGTGTTTTCATTCCA
CAGGTTGTTCATGGATGCAACACTCCACATATTACACCTAGATACTCAAA
ACACCTTGTATACCCTATGTATTTCTTTGTATCTTCCACAGTCTATTCAG
ACACTATTCATACCTGTACCAACACTATTATTGCTTCTGCCTCATATAGC
GTATTTAGGAACCAATTTCTTGTCATGAGAAACACACCCAAAGGAATATA
AAGTTTTGGCAAGAGCTAAA
CCCCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGAAAGTCTTTAATTGCTTTCTTA
ATTTCTTTCCTGTCCCAGAGACCACTGAGTAGAGAACTGTTCAGTTTCTA
TGAGTATGTACGCTTTCTGTTTCTGTTGTTAAAGTCTAGCTTTAATCCTT
GGTATCTAAAAAGATGCATGGGGTTATTTCAGTCTTCTTGTATCTGTTGA
GCATTACTTTGTGACTATTTATATGGCCAGTTTTGGAGAACGCTCCGTGA
ATTATTGTCCTGATTTGGTTGTTGGAGGCCTTCTCTTTTATGAAGAGGAA
ATGGAGGGTTAGTGACTCTCACGAGGAGGGGAGGTGGAGTGTGATCTAAC
ACGAGAGAAAGTAGGGTAAACTGTGATAGGAATGTGCTCTATGAGAGAAG
AATGTATTTCAAAACTTGTCTCTTTTTTCCCATTATTGATTGTTACATGC
AAATTATATATATTATATGTTACATATGTATGTTATATATGATTATATAT
ATTAATGATATATAATAATTTTATTTAATCTAATATATACTTACAAATAA
TATTTCTTACCCCACACATTTTTCTCTTTTCCTCTCATTATCACATTCTC
TCTCACTATCTCTTATCCTATTTATCTTCTCTTTCTCCTTTTTTCTCCAC
TCTTCTCTATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_g09.b1 MSMg01no137_g09.b1 CHROMAT_FILE:
MSMg01no137_g09.b1 PHD_FILE: MSMg01no137_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:04 2005
         (400 letters)



>mm_chrX_129749475_129750273
          Length = 799

 Score =  750 bits (388), Expect = 0.0
 Identities = 397/400 (99%), Gaps = 1/400 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaattaaatccaataatatgacatactttccattatgagtttttcatatttatatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaattaaatccaataatatgacatactttccattatgagtttttcatatttatatattt 260

                                                                       
Query: 61  aatactctcttctaagaaaattttctgtcataattatattaatatagctgataaaatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatactctcttctaagaaaattttctgtcataattatattaatatagctgataaaatcct 320

                                                                       
Query: 121 caagatgtggttactctccatcagtatagttctatcccatcctatatttaattgtttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagatgtggttactctccatcagtatagttctatcccatcctatatttaattgtttctt 380

                                                                       
Query: 181 tcccagctgaatgtaaattccaattcgtttgcaacttttgctgatctatagctactctgc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tcccagctgaatgtaaattccaattcgtttgcaacttttgctgatctatagctactgtgc 440

                                                                       
Query: 241 aaatattttaaccttgtcttcatctcagcatgtttcaatatcacacattgagccataaac 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aa-tattttaaccttgtcttcatctcagcatgtttcaatatcacacattgagccataaac 499

                                                                       
Query: 301 tctgtgtggatttcctaattactccaaagaggttatactatacaataagcgtctactccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctgtgtggatttcctaattactccaaagaggttatactatacaataagcgtctactccc 559

                                                   
Query: 361 tggatagttgatcatttcatttgatttcagctctgacacc 400
           |||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 tggatagttgttcatttcatttgatttcagctctgacacc 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 799
Length adjustment: 9
Effective length of query: 391
Effective length of database: 790
Effective search space:   308890
Effective search space used:   308890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)