BAC Information

Click to search

BAC

Clone NameMSMg01-137O04
ChromosomeX (Build37)
Map Location 73,425,867 - 73,426,154
singlet/doubletsinglet
Overlap genenone
Upstream geneF8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b, EG635243, Pls3, LOC635275, EG635295, LOC667537
Downstream geneLOC385472, LOC100041147, EG238829, Magea7, 4930428D18Rik, EG544974, 4930468A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137O04.T7 (MSMg01no137_o04.b1)MSMg01-137O04.TJ (MSMg01no137_o04.g1)
ACCAG343695AG343696
length740746
length of high quality
(start - end)
288 (70 - 357)253 (66 - 318)
definitionCHROMAT_FILE: MSMg01no137_o04.b1 PHD_FILE: MSMg01no137_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:44 2005CHROMAT_FILE: MSMg01no137_o04.g1 PHD_FILE: MSMg01no137_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGCAGTGGGCGGAATT
CACTATGTCTTTCAGAGCTGGCTTTGAATTCATGACCATCTTCTACCCTC
AAAGATAACAGACATGAGCTAACAACATATGGAAGCTGGCAATCTCCTTC
CACATGTGGGACTCAGGGCTCATTCTGAGCTCCAAAGGCTTGGGAGTTAC
CCACTGAGATAGCTCACTGGCCCGAGTTCCCTTCTCTTCAGCTCTCATTC
TTTAAATCTAGAAGCTTTGTTGTTATCAAATGACATATAATACTGTCAGA
ATTCCTCTTCCCCCACCTTCTTTTTTGTTTCATTCTTCTTGTTCTAGGGA
TTAAATCCAGGGCCTTGTTAAGGCTTAGCACTGTGAGCTACATAGCCCCT
GTCCCTTTCATACTATAGAATATTGCCCCAGAAATATTTATTTGATTCCT
TAGTGATTAAAAACATAGTTTGTATTTAAAATCCATTTCCATGGAAATCT
TACTCTTAAGATGTATATGCCCATAGTATCCCAATTTAGTTCCTTTTGTT
TGAATCTTATTGGGTGTGGCCTGTTTTCCCAAAGATCTGTGTTTTTACTC
CCATTAGCTTCCTCGGAAAAACTAGGTCAAAAATACAGTTTCCCTTGGTA
ACCTGCCTTGGTAACTCATTAAACTTTATAATCCATACCCTCCCGACAGA
AGGGCCTCGCACCCCTGTATTAGGAATTACTTTGGCCTCC
TACATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCTGGAATTCTCACCTGAGGAATACCGAATGGCTGAGAAA
CACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTC
CTCCACTGCTGGTGGGATTGCAAGCTTGTACAACCGCTCTGGAAATCAGT
CTATTGGTTCCTCAGATATTTTTATATGGTACTACTGGAGGATCCCGCAA
TACCTCTCCTGGGCATATATCCAGAATATATTCCAACTAGTCAGAAATAA
ATATGTTCCACTATGTTCTTAAGAGCCATATTTATTATATCCCAGAAGCT
GGAAAGAACCCAGATGCCCCCTCAACAGAAGAATGGATACTAAACAATAA
TGTGGTACTTTTAAACATGGCAGCACTACTCAGTCTATTATAAGGAATGA
ATTTTTGAAATTCCCTAGGCCTACGGCTGTATCTGTATTGTATTTATCTG
AAGAGTAATATCCCTTTCGTAATAGAACTTTAATGATATGTTCTTCTTTG
GTATCTGGATATTTTCTCATTAATTTTTAATTGTCCTATATTTTGTTTTC
TTTTTTTGTCATAGCTTTTTAATTCCTCATTAATCTTTAACCGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_o04.b1 MSMg01no137_o04.b1 CHROMAT_FILE:
MSMg01no137_o04.b1 PHD_FILE: MSMg01no137_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:44 2005
         (288 letters)



>mm_chrX_73425667_73426354
          Length = 688

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctttgaattcatgaccatcttctaccctcaaagataacagacatgagctaacaacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctttgaattcatgaccatcttctaccctcaaagataacagacatgagctaacaacata 260

                                                                       
Query: 61  tggaagctggcaatctccttccacatgtgggactcagggctcattctgagctccaaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaagctggcaatctccttccacatgtgggactcagggctcattctgagctccaaaggc 320

                                                                       
Query: 121 ttgggagttacccactgagatagctcactggcccgagttcccttctcttcagctctcatt 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ttgggagttacccactgagatagctcactggccctagttcccttctcttcagctctcatt 380

                                                                       
Query: 181 ctttaaatctagaagctttgttgttatcaaatgacatataatactgtcagaattcctctt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttaaatctagaagctttgatgttatcaaatgacatataatactgtcagaattcctctt 440

                                                           
Query: 241 cccccaccttcttttttgtttcattcttcttgttctagggattaaatc 288
           |||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 441 cccccaccttcaggtttgtttcattcttcttgttctagggattaaatc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)