BAC Information

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BAC

Clone NameMSMg01-140A21
ChromosomeX (Build37)
Map Location 122,667,114 - 122,667,454
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665463, EG665522, LOC100038969, LOC100038978, EG665579, EG665611, EG626048
Downstream geneLOC100040410, LOC100039903, LOC665679, 4932411N23Rik, Gm381, LOC100040472, Gm382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140A21.T7 (MSMg01no140_a21.b1)MSMg01-140A21.TJ (MSMg01no140_a21.g1)
ACCAG345301AG345302
length727727
length of high quality
(start - end)		683 (45 - 727)655 (73 - 727)
definitionCHROMAT_FILE: MSMg01no140_a21.b1 PHD_FILE: MSMg01no140_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:39 2005CHROMAT_FILE: MSMg01no140_a21.g1 PHD_FILE: MSMg01no140_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTAAAACTCCCGGAATTTGGAGCACCTGTGAGGAATTTTTTTTTC
CTGATTTGATTATGTGAAATAGGAAGACAAACCCCAAATGTAGATCGTTT
GTTCTGTTGTAGAAACAACTCTAAAATATAAATTTCATTGATGTCAGTTT
TTTAATAAAAGTGTGTAGCTAGGACTAAATTCTAGTAGTTACAATCAAGA
TAGTTTTTATGATCCTACACTGTTTCTGTCTTTTATTACAGTGTTTCCTG
AACACTGAGGTGGAGATTTGATGGTGACCTCCCTTGTAGGACTGAATGTT
AGAAGGTGCCTCAGGCTTTGCATATTATCTGGCTGGTAGATTAGAAAGGA
GATGGTTAAAAGCAAAATTGGATGGATGAGCAGTTAGGCATTCCAAAGAT
TAAATGGTGCTTGACTAACCTCGTAAGCTATCTCCCTCTATTCTCTGGGA
CTGGTTGTTGCTAGTCTATTTCTGTTTGTCCTTATATATCAGATTGATAT
TTCCCAAGTGTCGTTCCTCCATGCCCAGAACCCTTATTTTTAGTCTTATA
CCTGAACAAGCTTCCTTTCATTTTCAGCTGATCTGCTCAGGTTTCAGTAT
TAGAGAGCATCTCAGCAGAGCTTGCAGCTCTATAACCCTGCCACTCCCAC
TGCTGCTGCTTTCCAACTAGCATTTCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGACAACCAGGGCTAAACAGAGAATC
CCTGCCTCGAAAAAAACAAAAACAATAAACAAATAAAGAGAAAATGAATG
ACACACAGGCATACAGAAGAGGACTGGTCCCAAAGACAGCTCTGTCCTAA
ATATACTAGAGCACATTGCTTCACAAAATGAATTCTGAACATGCTCTCAC
ATAGGGCATTTGAATATACTTTCTAGGTTAACCCCATATGATCACAAGAA
ACAAAAGGTAACAAGAAGATCAGAGTCAGAAGTATATCTCAGACTCATGT
CAAAGACAGTCTGGGAGGCACACCATGCTTCAGTTTTCAAAGTTCCAGAG
AGTGGTTCTCCACCTTTTTAATACTGCGGTTCCTTCATATATATACTTCC
TTATGCTGTGTGGTGCCCCAACCGTAAAAATATTTTTTGCTGCTTCATAA
CTGAAATGTCCTACTGATATGAATTATAACATACATTTCTGACATACAGA
TAGTCTAGGACAACTCCTGTGAAATTTGTCACAAGGACTAGCAACCTACA
GGTTGCCAACCACAGTGCCAGCAAATAGGAAAACTAGCCAGCCCCTTGAT
TTTTACAATGTTGCCTTCTGTAACTGTGGTAGAATAGATGTGCTCTATTT
TAGTGGTCTAAGCATGTGAGGATCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_a21.b1 MSMg01no140_a21.b1 CHROMAT_FILE:
MSMg01no140_a21.b1 PHD_FILE: MSMg01no140_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:39 2005
         (683 letters)



>mm_chrX_122666914_122667996
          Length = 1083

 Score =  462 bits (239), Expect = e-134
 Identities = 316/343 (92%), Gaps = 7/343 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactaaaactcccg-gaatttggagcacctgtgaggaa---tttttttttcctg 59
           ||||||||||| |||| | | ||| |||| ||||||||||||||   |||||||||||||
Sbjct: 201 ggaattcactagaact-ctgagaaattggggcacctgtgaggaattttttttttttcctg 259

                                                                       
Query: 60  atttgattatgtgaaataggaagacaaaccccaaatgtagatcgtttgttctgttgtaga 119
           |||||||||||||| |||||||| | |||||||||||||||||||||||| |||| ||||
Sbjct: 260 atttgattatgtgagataggaagtccaaccccaaatgtagatcgtttgttttgttataga 319

                                                                       
Query: 120 aacaactctaaaatataaatttcattgatg-tcagttttttaataaaagtgtgtagctag 178
           |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 320 aacaactctacaatataaatttcattgatgct-agttttttaataaaagtgtgtagctag 378

                                                                       
Query: 179 gactaaattctagtagttacaatcaagatagtttttatgatcctacactgtttctgtctt 238
           |||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||||
Sbjct: 379 gactaaattctagtagtttcaatcaagatcgtttttatgatcttatactgtttctgtctt 438

                                                                       
Query: 239 ttattacagtgtttcctgaacactgaggtggagatttgatggtgacctcccttgtaggac 298
           ||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 439 ttattacagtgttccctgagcactgagggggagatttgatggtgacctcctttgtgggac 498

                                                      
Query: 299 tgaatgttagaaggtgcctcaggctttgcatattatctggctg 341
           ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 499 tgaatgttagaaggtccctcaggctttgcatattatctggctg 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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