BAC Information

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BAC

Clone NameMSMg01-140L06
ChromosomeX (Build37)
Map Location 33,438,016 - 33,519,989
singlet/doubletdoublet
Overlap geneDock11
Upstream geneLOC100039473, LOC100039550, LOC100039557, LOC100039573, EG665074, LOC100039585, LOC100039497, EG210457
Downstream geneIl13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1, B230333C21Rik, LOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140L06.T7 (MSMg01no140_l06.b1)MSMg01-140L06.TJ (MSMg01no140_l06.g1)
ACCAG345770AG345771
length724723
length of high quality
(start - end)
370 (66 - 435)382 (72 - 453)
definitionCHROMAT_FILE: MSMg01no140_l06.b1 PHD_FILE: MSMg01no140_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:30 2005CHROMAT_FILE: MSMg01no140_l06.g1 PHD_FILE: MSMg01no140_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,519,624 - 33,519,989)(33,438,016 - 33,438,397)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATT
CTACACAACATCACCGAATCTCAAAAGCATACTGAGTACACATAACCAAT
CCCAGGAACATATGCTGCAGGATTCCACTTTAATGATGAGTTCAGGAGAG
ACAAAATTTTATCCAATGATAATCAGATGGATGGTTGCCTGGGTGCCTAG
ACAGGGCCATGAGGAACCTTTCTGTCTATATTGTACCAGTCATTGTTAAA
GTGGTCGTTGCATTTGTGAAAATTTATTAATGTGGATATATATATAATTC
ATTTTATCTCCATAAAACTGATAAAAATTAAAAATTACATTGGCTCCTAA
ACATAATTTTATATAAAGTTTACTACATATATAATCATATGATTTTGAGA
GGCTTTCCCCAACTCTTTTTTTTTTTTTTTTGAGACAGGGTTTCACTTGT
TATCCTTTGCTGGCCTGAAACTGGCTGGCCTTGACCTTACAGACCTGTTT
GCCTCCTCCCTCTACTTCCAAATTGCTGGTATTATTGATGTGTGCTCCTC
CACTTCCAATCCTCTTCCAAACTCTTAATTATCTATTTTGTTGCTATATT
GTATCGTTATTACCCCATCCCCTATTGTCCTCGCACCTATCTATTCATCC
TTATATCCCTAACCTCCTCTTCACAAACCCATTGCCCCCGCTAAAAAAAA
TTTTTTTTTCTTATCCCATACCTC
GAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGGCTAACATTGGTCTGCCATTTGTATC
AGTCTGGAGCCAGATGCCTTTTTGATTCTTTGCACAGCCCCACCCTAGAG
GCTTCCTGAGCAGAAACTGGAGTGGGGCAAGGGGGCAGTCTCACCAAGCT
GCTGTTGCCCCTAAGCTCATGCTTGCTAGAGCAATGGGTAAGAAAAGCCA
ACTGCTTTCGAGCAGGATGACACCAGGCCAGTGCATCAAGAAACACATTA
GAACATATGATCCACATGAGTGTTGTGCTAGGGGAGACAGATTGGTTGGT
AAAACGCTTCGATGAAGACAAGTGTGGTCTTGAGCTCCAGAACCCATGGG
AGATATGCCAGGTGTGGTGGTACACCCTTGTAATCCCAGTTCAGAGGAGG
TGGAGTCCAGTGGAGCCCTGGGCTCAAGGCTCAGCCAGTCTAGCCTACTC
TGTGAGAGATAGTTGGTTGACCCGATGAAAGAACCAAACCACAACCCTCT
CCTCCTACACATTTCTACCATTCCCTCTCCTCTCACTCCACCTCTCTCTC
TTCTCCTATCCATCCCCCCCCTCCTTCTCTTCACTCTATCTCTCCCTCCT
TTATTCCCTTTTCTTCTCTTTCTCCTACCCTTTTCTCTCCCCCTTACCTC
TTTTTCACCCCTTTTCTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_l06.b1 MSMg01no140_l06.b1 CHROMAT_FILE:
MSMg01no140_l06.b1 PHD_FILE: MSMg01no140_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:30 2005
         (370 letters)



>mm_chrX_33519265_33520034
          Length = 770

 Score =  700 bits (362), Expect = 0.0
 Identities = 365/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatctcaaaagcatactgagtacacataaccaatcccaggaacatatgctgcaggattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaatctcaaaagcatactgagtacacataaccaatcccaggaacatatgctgcaggattc 666

                                                                       
Query: 61  cactttaatgatgagttcaggagagacaaaattttatccaatgataatcagatggatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cactttaatgatgagttcaggagagacaaaattttatccaatgataatcagatggatggt 606

                                                                       
Query: 121 tgcctgggtgcctagacagggccatgaggaacctttctgtctatattgtaccagtcattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgcctgggtgcctagacagggccatgaggaacctttctgtctatattgtaccagtcattg 546

                                                                       
Query: 181 ttaaagtggtcgttgcatttgtgaaaatttattaatgtggatatatatataattcatttt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttaaagtggtcgttgtatttgtgaaaatttattaatgtggatatatatataattcatttt 486

                                                                       
Query: 241 atctccataaaactgataaaaattaaaaattacattggctcctaaacataattttatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atctccataaaactgataaaaattaaaaattacattggctcctaaacataattttatata 426

                                                                       
Query: 301 aagtttactacatatataatcatatgattttgagaggctttccccaactctttttttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aagtttactacatatataatcatatgattttgagaggctttccccaactctttttttttt 366

                 
Query: 361 tttttt 366
           ||||||
Sbjct: 365 tttttt 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no140_l06.g1 MSMg01no140_l06.g1 CHROMAT_FILE:
MSMg01no140_l06.g1 PHD_FILE: MSMg01no140_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:31 2005
         (382 letters)



>mm_chrX_33437816_33438597
          Length = 782

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggctaacattggtctgccatttgtatcagtctggagccagatgcctttttgattcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggctaacattggtctgccatttgtatcagtctggagccagatgcctttttgattcttt 260

                                                                       
Query: 61  gcacagccccaccctagaggcttcctgagcagaaactggagtggggcaagggggcagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacagccccaccctagaggcttcctgagcagaaactggagtggggcaagggggcagtct 320

                                                                       
Query: 121 caccaagctgctgttgcccctaagctcatgcttgctagagcaatgggtaagaaaagccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccaagctgctgttgcccctaagctcatgcttgctagagcaatgggtaagaaaagccaa 380

                                                                       
Query: 181 ctgctttcgagcaggatgacaccaggccagtgcatcaagaaacacattagaacatatgat 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ctgctttcgagcaggatgacaccaggccagtacatcaagaaacacattagaacatatgat 440

                                                                       
Query: 241 ccacatgagtgttgtgctaggggagacagattggttggtaaaacgcttcgatgaagacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacatgagtgttgtgctaggggagacagattggttggtaaaacgcttcgatgaagacaa 500

                                                                       
Query: 301 gtgtggtcttgagctccagaacccatgggagatatgccaggtgtggtggtacacccttgt 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtggtcttgagctccagaacacatgggagatatgccaggtgtggtggtacacccttgt 560

                                 
Query: 361 aatcccagttcagaggaggtgg 382
           ||||||||||||||||||||||
Sbjct: 561 aatcccagttcagaggaggtgg 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)