BAC Information

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BAC

Clone NameMSMg01-141A22
ChromosomeX (Build37)
Map Location 18,736,952 - 18,737,608
singlet/doubletsinglet
Overlap genenone
Upstream geneUtx, LOC100043952, 4930578C19Rik, LOC100043098, EG628855, LOC385333, EG628871
Downstream geneLOC100043953, BC049702, LOC675558, LOC668995, LOC385336, Chst7, Slc9a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141A22.T7 (MSMg01no141_a22.b1)MSMg01-141A22.TJ (MSMg01no141_a22.g1)
ACCAG346031AG346032
length1,1831,185
length of high quality
(start - end)		731 (98 - 828)656 (88 - 743)
definitionCHROMAT_FILE: MSMg01no141_a22.b1 PHD_FILE: MSMg01no141_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:02 2005CHROMAT_FILE: MSMg01no141_a22.g1 PHD_FILE: MSMg01no141_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCATCACTTTNNNNTACACTGGGCGCTAAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCAACGACATTAAAAACTTCATATAAAAGCTCCAGGNAAA
ATAAAGGTAGTGTAATATCACCGTAAAACCCCATTCAGCTTCTAACTTGT
GAAAACTAACTTTTCACTGCTTAAGCAGTGAGAGAAACCATGAAAAACAA
AAATCTGAGGAAATGTATTTTGAACAAGGGGCAAAATTCTAGTCTCAGAA
AGCAGAACTTAACCACTTTGGTCATATGGTTCAGGCTTTAGACTCAAGGA
TTAAAGGAAGGAGTTGTAGAAGCTCCCTCCATAACTAAGGAAAGTCTCCA
AGGCCAGGAATTTATCAGTGTGTCCCTGCATGGGAGCCCAGAGAGGCCAT
TTTATGAAGCTGGTATAGTGAAGTCTGGACTATGTTGGAGATCCCAAGAT
GCTGGAAATCCTACCATCATGAGATACCTGATGAAGAAAACTGTAGATTG
GGTATAGAAACAACACAAGAGAAAGAAGGGTATTGCAGTTAACAAAGCCA
AAAGGAATTAGAGATATGAATATTAATTTTACGCAAGACATCAAGATACA
GAATTTGGAGTTTTCCCTGCTGTCTGTCTGTCTGTCTGTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTT
TGGNTCAGTATTTCCTCACTATACACCCTTACTTCCCTTTGAAAAGGTAG
TGTATGTCCTATTGCATTGTATTTTGGAAGCATGTAATCTGTCTTTTGAT
TTTGACTTTGCAGGGGGATACAGTTAAAAGATTATCATACCTCTTAGAAA
TAATTTAAACTTTGGACTTTTAAACAGCATTGAGGCTATAAAAAATTAAG
GGGACTTTTTAAAAGCCCTAAAGGTCTTTTTGCATTATAAAATGGCTACC
AAATTATTGGGGAAAAGGAATAAAAAGGGGGGGGCCCAAAAAAAAAAAAT
GCCCCAAAGCTCCTAAAATTGAATATGTTAGGAGAAAAAAAAATTTTTGG
GGGGCCCCTTTGTGAAAAAAAGGGCTTTGTTTCGGGCTCTTTTTTTTTAT
AAAACCTCAATACTTCCACCTGCTTTTTTTTTC

NCCCGTTCTTTTTNAATAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAGGTTTCAGTTGATCTA
AAGCACTAATGAATTTACTCATCTAACTTCCCCTATTTTTTCCTCTCAAG
TTTTCACTTGAAGGTGGGGGTGGAGGGAAGAAGTAATGAGCACTTCAATC
GTTGGGTGAACTTTTGGCAGAAAGGTACAGGGAGTAGGGGATCTGTATTT
ATGAATATATGTTTATGAATATATGTTTCCTTTGCCTCCATCTAGTTCTG
AAGGCTTTCTATAGGAACAGCTTAGAAGCAACCACCAGTGCCCATGAAAA
AACAAAACTTTCTGTTTGTTCCAGGAGTTTAGTTTCATATTATGGAAATG
CAGCTGGAAGGTTGATAACTTCCTCTCTCTGTAAATGCTAAGAATTCAGT
GTAGAAGGCAGGTGAAGGCAGCCCACCCAAGGCCATGGATTTAAAGGACT
TGGAAATCTCTAAAATGTTTCATTGTTCTTGAACTGATCCTACCTCTAAG
AGGACATGCTAATAAGGCTTCCCTTCATTCCATCATTTTTTCTGTTCATT
CATTCATCCTTATTTTCTCTTATTCAAGCTCTTCCTGGAGACAGAAGAAA
GACAGAAAGAAAGGGATCGACTAATAGTCTATAAAATGGGGTTGGAGAGA
GGAGTAGCTGTAAGCTATAAACTTACTTTGTCCCTTTTCCCTCAGTAAAG
GTCTTTTGTTTGATACTTGTCATTCGGGAGCCACTATTCTTCTCACAGAC
AGAAACTCATTATTTTAAACTTTTCTGTCCATCAAAATTCTTGGTTTAAT
TGCATAAAAAACGATTTGTGAGCTAAATTTATTCATCAAAAATGGTTGGA
TGGATACTTTGAATTCCCTTCTTTTATGCTTAATTTTAACTTTGAATTCC
TACCATTTTATTTTCTAATCTTTTCTTATTCCAAATTTTTATTTTTTATT
AAACCCCTTCAAAGATCTTTTTTATAATATTTTATTCTTTTTCTATCCTT
CCCACATTTAATCTTTTCTACTTTTATCTTTATTTCAACTTTTTAATAAA
TCTTTCTTTTTTTTACTATATCTCATTTTCTTTACTTTATATTTTTTCTT
ACTTTTATTTAATATCTTATCTTTTCTCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_a22.g1 MSMg01no141_a22.g1 CHROMAT_FILE:
MSMg01no141_a22.g1 PHD_FILE: MSMg01no141_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:02 2005
         (656 letters)



>mm_chrX_18736752_18737808
          Length = 1057

 Score = 1263 bits (653), Expect = 0.0
 Identities = 656/657 (99%), Gaps = 1/657 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagttgatctaaagcactaatgaatttactcatctaacttcccctattttttcctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ttcagttgatctaaagcactaatgaatttactcatctaacttcccctattttttcctctc 798

                                                                       
Query: 61  aagttttcacttgaaggtgggggtggagggaagaagta-atgagcacttcaatcgttggg 119
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 797 aagttttcacttgaaggtgggggtggagggaagaagtatatgagcacttcaatcgttggg 738

                                                                       
Query: 120 tgaacttttggcagaaaggtacagggagtaggggatctgtatttatgaatatatgtttat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgaacttttggcagaaaggtacagggagtaggggatctgtatttatgaatatatgtttat 678

                                                                       
Query: 180 gaatatatgtttcctttgcctccatctagttctgaaggctttctataggaacagcttaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaatatatgtttcctttgcctccatctagttctgaaggctttctataggaacagcttaga 618

                                                                       
Query: 240 agcaaccaccagtgcccatgaaaaaacaaaactttctgtttgttccaggagtttagtttc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agcaaccaccagtgcccatgaaaaaacaaaactttctgtttgttccaggagtttagtttc 558

                                                                       
Query: 300 atattatggaaatgcagctggaaggttgataacttcctctctctgtaaatgctaagaatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atattatggaaatgcagctggaaggttgataacttcctctctctgtaaatgctaagaatt 498

                                                                       
Query: 360 cagtgtagaaggcaggtgaaggcagcccacccaaggccatggatttaaaggacttggaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cagtgtagaaggcaggtgaaggcagcccacccaaggccatggatttaaaggacttggaaa 438

                                                                       
Query: 420 tctctaaaatgtttcattgttcttgaactgatcctacctctaagaggacatgctaataag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tctctaaaatgtttcattgttcttgaactgatcctacctctaagaggacatgctaataag 378

                                                                       
Query: 480 gcttcccttcattccatcattttttctgttcattcattcatccttattttctcttattca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcttcccttcattccatcattttttctgttcattcattcatccttattttctcttattca 318

                                                                       
Query: 540 agctcttcctggagacagaagaaagacagaaagaaagggatcgactaatagtctataaaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agctcttcctggagacagaagaaagacagaaagaaagggatcgactaatagtctataaaa 258

                                                                    
Query: 600 tggggttggagagaggagtagctgtaagctataaacttactttgtcccttttccctc 656
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tggggttggagagaggagtagctgtaagctataaacttactttgtcccttttccctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1057
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1047
Effective search space:   676362
Effective search space used:   676362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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