Query= MSMg01no141_g19.b1 MSMg01no141_g19.b1 CHROMAT_FILE:
MSMg01no141_g19.b1 PHD_FILE: MSMg01no141_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:48 2005
(705 letters)
>mm_chrX_84907109_84908213
Length = 1105
Score = 1212 bits (627), Expect = 0.0
Identities = 681/703 (96%), Gaps = 13/703 (1%)
Strand = Plus / Plus
Query: 5 gaattc-actaataaaaccaaagccttt--aa--aagcaaaggaaaagtttatctgaaaa 59
|||||| |||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 205 gaattcaactaataaaaccaaag----tggaaggaagcaaaggaaaagtttatctgaaaa 260
Query: 60 tatatactcgtacattgaattaaatacccatttcaatgtactaggattgaatctttctcg 119
|||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct: 261 tatatacttgtacattgaattaaatgcttatttcaatgtactatgattgaatctttctcg 320
Query: 120 cactagcttaattaccaaaggtttttgctctataagataagtcaattagactctgataaa 179
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 321 cactagcttaattaccaaaggtttttgctctataagat-attcaattagactctgataaa 379
Query: 180 gcctcaacaatgcatttttcaaatttccctggacatcactgaatgagattatgttcaatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcctcaacaatgcatttttcaaatttccctggacatcactgaatgagattatgttcaatc 439
Query: 240 gtggaaatagtatcgatgttaaaataatgttgtatgtatttatgcttgcttgatataaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtggaaatagtatcgatgttaaaataatgttgtatgtatttatgcttgcttgatataaat 499
Query: 300 atttgcctagatctatgaggagagttcagtgtaatacaacaagttacaaaattattaaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 atttgcctagatctatgaggagagttcagtgtaatacaacaagttacaaaattatgaaca 559
Query: 360 ctgaaacatgaatgattctgttctttagctcacaagccctcaaggtaaattatcttatag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgaaacatgaatgattctgttctttagctcacaagccctcaaggtaaattatcttatag 619
Query: 420 ttaatgcttttattttctaatttttattttctaaccacagtaacatcctatcattacaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttaatgcttttattttctaatttttattttctaaccacagtaacatcctatcattacaat 679
Query: 480 atgaatcattaactcatttggagcacacagacaatgaaaacagtagttgattcagacaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgaatcattaactcatttggagcacacagacaatgaaaacagtagttgattcagacaga 739
Query: 540 agttcttttatagtacaatgagaatcctgtaagagaatctcataagaaattagagttcat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agttcttttatagtacaatgagaatcctgtaagagaatctcataagaaattagagttcat 799
Query: 600 ttaatcactagatatggactgattttgcccacaataaaatttgtaaagtggcaaatttat 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 800 ttaatcactagatatggactgattttgcccacaataaaatttgtaaagtggtaaatttat 859
Query: 660 ataattttaattttaatttattgttgttgttgttgttatattg 702
||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 860 ataattttaattt--attg-ttgttgttgttgttgttatattg 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_g19.g1 MSMg01no141_g19.g1 CHROMAT_FILE:
MSMg01no141_g19.g1 PHD_FILE: MSMg01no141_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:48 2005
(641 letters)
>mm_chrX_85059776_85060816
Length = 1041
Score = 1077 bits (557), Expect = 0.0
Identities = 563/565 (99%)
Strand = Plus / Minus
Query: 77 tcccaatgcctacatgcttcaggttccaattcagatttaagtcataatgctgccctacta 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 tcccaatgcctacatgcttcaggttccaattcagatttaagtcataatgctgccctacta 982
Query: 137 ttaatagactcttcctccatttcacaactgccttggttaaggtgtacatgtctatgtctg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 ttaatagactcttcctccatttcacaactgccttggttaaggtgtacatgtctatgtctg 922
Query: 197 tgggttttgttgcaatattttaaaatgtcaatttagttatcaaaatttgtacatatgtta 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tgggttttgttgcaatattttaaaatgtcaatttagttatcaaaatttgtacatatgtta 862
Query: 257 ttttttaatttaaatattttgtgtgttgtgtgtacatgtgtatgcatgtgtagtatacag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttttttaatttaaatattttgtgtgttgtgtgtacatgtgtatgcatgtgtagtatacag 802
Query: 317 acacatgtttcatagaagaatatgtgctaaagtgtgtatgtggaggctgacgacaattaa 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acacatgtttcatagaagaatatgtgctaaagtgtgtatgtggaggctgacgacaattaa 742
Query: 377 gtggagacatctttgtttactttatccacttcaagtcaccaggtatcgctgctagcatct 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtggagacatctttgtttactttatccacttcaagtcaccaggtatcgctgctagcatct 682
Query: 437 tgctgtgtaatcttggtagcccataacttttaaaagcccttgtagaatattgcttttcaa 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctgtgtaatcttggtagcccataacttttaaaagcccttgtagaatattgcttttcaa 622
Query: 497 tgcatgtgatcatcttaatagcttatttgtaaaattacatggaaacatggaacatttgga 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcatgtgatcatcttaatagcttatttgtaaaattacatggaaacatggaacatttgga 562
Query: 557 aatcattccttattaattttgtactttccttgtcctttcttggtactctttgaattatgt 616
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 aatcattccttattaattttgtactttccttgtcttttcttggtactctttgaattatgt 502
Query: 617 aattttcttttttgtgttttcacta 641
|||||||| ||||||||||||||||
Sbjct: 501 aattttctcttttgtgttttcacta 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
