BAC Information

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BAC

Clone NameMSMg01-141N06
ChromosomeX (Build37)
Map Location 37,330,749 - 37,331,141
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670539, LOC100039700, 1700085A12Rik, LOC100039715
Downstream geneEG636756, EG636766, EG245391, LOC100039769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141N06.T7 (MSMg01no141_n06.b1)MSMg01-141N06.TJ (MSMg01no141_n06.g1)
ACCAG346600AG346601
length1,2301,639
length of high quality
(start - end)		685 (84 - 768)---
definitionCHROMAT_FILE: MSMg01no141_n06.b1 PHD_FILE: MSMg01no141_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:41 2005CHROMAT_FILE: MSMg01no141_n06.g1 PHD_FILE: MSMg01no141_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTTTTTNTNNNATCATTGGCGCTAAGACTCCTAAGGGAGAGGATCCGCG
GAATTCTAAGTAATAAAAGTCCCTTAAGATACAAATTGGTTGTTTAAAGT
TATCATTTATTACTAATAAGTACTTTTATAACTCCGAGGATGTATTATTA
ATTTGGCAATTAACACAACATATGGTTACCTTTATAACAGATAAAATAAT
TGCACATAGGCATCCATTATAACATGAAATTTCAATGTATGTATATATTT
AATGATCAAATTGGTAAGTCACAAAGAAACCATAGACGAATGGTTAACTG
GGGTGCCTATTTAGCATGTTGAATCAGATACTGGCCTCCAGGTTCTCTTA
GCATTTCTCAGAATTGCAAGTACCTCCTCAGGCCCTAAGTGTCTCTTCCC
TTTCCCCAGCTTCTTTATTCCTACAAACATTAGCCATTTTGGCTACTCAT
CCTCTTAGCTCTTGATTCTTCTGAGTTCTGCTCTGGGTTCCCCTTCAGAA
TCTCTCTTCCTGTTTTACTCTCTCCTTTCCCTCTAGTTTCTGTTTGTTTT
TCAGTCTTCTCTTGTGACTTGGTTCTGTCTGTTAGCCTTGTTCAGTCTGG
ACACTTCCAGATGTCTCTGGCTGTTTTTTCTTCATATCTACCATAAACGT
TCTCCTCAACTTATACCAAGGACCAGTCATGTCCTCATTTCCACTAACGA
ATCAGGTAAACAAACAAATCTGTCACTTCAGACATGTATGATAACTTTGT
GATATTTGGAATATTCAAAGTACAGTCTACTTTTCAAATGTTTTTGTTTT
CCAGGTCTCTCCTTCAGAAACTCCCTATCTCATCCCCCTCCCACTGCCTC
TATGAAGTTGTTCCCCCACCCACCCACCATTCCAGAATTTCCAGCCTGAC
ATTTCCCCTACAATTGGGCATCAAAGAAACTCAGGTCTGAAGCCCACTAC
TCCCCCTTGTGGTCCAAAAAGGCCCTTCCTCCTGCTCCTTAAGGTGGCCC
GAACACTTGGTGCCCCTCCATGTGGGACCTCGGGCTGGGTGCCCCCACGT
CCCCAGGAAATCTCCCAAAAGGTCCCGGGCTTTGGTTTAAACCTGGTTGT
CTTCCCCCCCTTGTGGGGAGGGCTATCCCCCCCCTCCATCTCCTTTTCAA
AAAATTTTTTCTCCAACTCCTTTCTCTCTAGGGGAAATCCCTCCTCTTAA
CTTCCTTTTGTGGTTTCTTAATACCCCCTT

TTTTTTTAGCTTGTGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTACTAGAGTTCTCAAGAGGGAGTGGGTGG
GTTTGTGAGCAGCCTTAAGGGGTATGGGATACCCCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNN
NNNNNTNNNNNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTCTTTTTTTTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTNTTTTTTTTTTTTT
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNTNNNNNNNN
NNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTTTTTTTTTTTTTTT
CTCCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTCTTTTT
TCTTTCTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTCTTTTTT
TCTTTTTTCTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTCTTTTTTTTT
TTTTTTTCTTTTTTTTTTTTTCTTTTCTTTTTTTTTTTTTTCTTTTTTTT
TTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TCTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTTTTT
TTTTTTTTNTTTTTTTCTTTTTNTTTTCTTCTTTTTTTTCTTTTTTTTTT
TTTCTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTCTTTTCT
TTTTTTTCTTTCTCTTCTTTTTTTCTTTTCTTTCTTTCTTTTTCTTCTTT
TTTTTTCNCCTCTTTTCTCTTTTTTTTTTTTTTCTCCTTTCTCTTTTTTC
TCTCTTTCTTTCTTTCTTTTCTTCTTTTTCTCTTTTTTTTTTCTCTTTTT
TTCCTTTTTTTTTCCTCTCTTTTTTTTTTTTCTTTTCTCTTTTCTTCTTT
TTTTTTTCTTTTTTCTTTTTTTTTCTCCTTTTCTTCTTTTTCTTTTTTCT
CTTTCTTTCTTCTTCNTTCTTTCTCTTTCTTCCTTTTTTTCTTTCTTTCT
TTTTTTTCTCTTTCTTTTTTTCTCTTTCTTTCTTCTTCTTTTTTTTCTTT
TTTTTCTTTTTCTCTCTTTCTTTNCTCTTCTCTTTTTTTTTCTTTNTTTT
TCTCTTTCTCTTTTTTTTCTCTTCTCTTTTTTCTTCTTTCTTTNTCTTTT
CTCCTTCTTTTTTTTTTTCTCTCTTCTTTTCTTCTCTCTCTCTTTTCTTT
CTTCTTTTTCTCTTTCTTTCTTCTTTTTCTCTTCTTCTTNTCTTTCTTTT
CTCTTTTCTTCTTTTCTTTTATTCTTTTTCTTTTTCCTTCATCTTCTTTT
TTTTCTTTTTTCCCCTCTTTTTCTTCTCTCTTCTCTCTCTCCTCTCTTCT
CTTTTCTTTTCCTNTCTTTTCTTTTTTCTTCTTTCTCTCTCNTTCTACTT
TTTTTCATCCCATCTCTTCTTTCTTCTTCATCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_n06.b1 MSMg01no141_n06.b1 CHROMAT_FILE:
MSMg01no141_n06.b1 PHD_FILE: MSMg01no141_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:41 2005
         (685 letters)



>mm_chrX_37330749_37331833
          Length = 1085

 Score =  745 bits (385), Expect = 0.0
 Identities = 391/393 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattggttgtttaaagttatcatttattactaataagtacttttataactccgaggatgt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 393 aattggttgtttaaagttatcatttattattaataagtacttttataactctgaggatgt 334

                                                                       
Query: 61  attattaatttggcaattaacacaacatatggttacctttataacagataaaataattgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 attattaatttggcaattaacacaacatatggttacctttataacagataaaataattgc 274

                                                                       
Query: 121 acataggcatccattataacatgaaatttcaatgtatgtatatatttaatgatcaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 acataggcatccattataacatgaaatttcaatgtatgtatatatttaatgatcaaattg 214

                                                                       
Query: 181 gtaagtcacaaagaaaccatagacgaatggttaactggggtgcctatttagcatgttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gtaagtcacaaagaaaccatagacgaatggttaactggggtgcctatttagcatgttgaa 154

                                                                       
Query: 241 tcagatactggcctccaggttctcttagcatttctcagaattgcaagtacctcctcaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tcagatactggcctccaggttctcttagcatttctcagaattgcaagtacctcctcaggc 94

                                                                       
Query: 301 cctaagtgtctcttccctttccccagcttctttattcctacaaacattagccattttggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  cctaagtgtctcttccctttccccagcttctttattcctacaaacattagccattttggc 34

                                            
Query: 361 tactcatcctcttagctcttgattcttctgagt 393
           |||||||||||||||||||||||||||||||||
Sbjct: 33  tactcatcctcttagctcttgattcttctgagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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