BAC Information

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BAC

Clone NameMSMg01-141P21
ChromosomeX (Build37)
Map Location 46,636,749 - 46,637,387
singlet/doubletsinglet
Overlap geneEnox2
Upstream geneLOC637576, Bcorl1, Elf4, Aifm1, Rab33a, Suhw3, Slc25a14, Gpr119, Rbmx2, LOC665752, Gm595, EG637758, LOC100040295
Downstream gene1100001E04Rik, LOC100041697, Olfr1320, Olfr1321, Igsf1, Olfr1322, LOC100040344, Olfr1323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141P21.T7 (MSMg01no141_p21.b1)MSMg01-141P21.TJ (MSMg01no141_p21.g1)
ACCAG346720AG346721
length1,1971,190
length of high quality
(start - end)		694 (88 - 781)637 (143 - 779)
definitionCHROMAT_FILE: MSMg01no141_p21.b1 PHD_FILE: MSMg01no141_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:04 2005CHROMAT_FILE: MSMg01no141_p21.g1 PHD_FILE: MSMg01no141_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGTTTCTTNNNAATCATTCGGCCTATCGACTCCTAAGGGAGAGGATC
CGCGGAATTCTTTGTTCAGTTCTGACCCCTATTTTTTATGGGGTTATTTG
ATTTTCTGAAGTCCACCCTCTTGAGTTCTTTATACCCGTTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCTGTTCAGGAATTGTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCT
TGATCCTCTTAGATTTGACCTTAGTACAAGGAGATAACTATGGATCGATT
CGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAA
AATGCTGTCTTTCTTCCACTGGATGGTTTTAGATCCCTTGTCGAAGATCA
AGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTGATCACAAT
TGCTCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCTGCCAGAAGTTC
TTTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAG
ACAAATTTGCAAATTGCTCCTTCCAATTCGTTGAAGAATTGAGTTTCAAN
TTTGATGGGGATTGGATTGAATCTGTAGATTGCTTTTGGCAAGATAGCCA
TTTTTACAATGTTGATCCTTGCCAATCCATGAGCATGGGAAGATCTTTTC
CATCTTCTGAAATCTTCCCTAAATTTCTTTTTCCAAAAATTTGAAGTTTT
TTATCATACGGATCTTTTCCCTTTCCTTAATTAAAGTTCTGCCCCAAAAT
TTTTTATTTTATTTGTTGACTTTTGGAAAAAGTTGTTTTCTTCCCTTAAA
TTTATATTTTTTCCCTTTTATTATTTTTTTGTATTTCATTATTATCTTTT
GTTTATGTCTTTATTCTTTCTTTTATTTTCATATTCTCTTTTCCTATTTT
ATCTTTATTTTTTTCTTTCTTTCCTCTTCTTCCTTCTCTATTCTTTT

NNCCCACCCTTTTNNATAAGAAGGNAGGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAGAAGAAAGAAAAAA
AAACAGAGACATTGGAGCTACTCTACTTCCCTTGTCTGACCCGTTGTGCA
AGTAAGGAAAGGTTTCTATACATTAACACAACCCAAAGCACTATGTGCTA
AATCCACATCAGTTTTGGACTGTTCTTGTCATGCTATGATCACATACAAC
TTGCCAGAGGGAATGTAAGAAGTCTAGGTAGAGTGACAACGACCAACAGG
TGATTTCAGGAAAATGCAAAACACTAAACCACCCAAGGGGGTTGATGGCT
CTTCCTAACAGAGTTCCTTATGAGAACTTTGCTTCTATCATTTATTTAAA
TTAATCTTCATCTGTAAAATAGTAATATTTTTTTTCCGAGACAGGGTTTT
ACTGTGTAGCTCCAGCTGGCCTGGGACTTAGTATATACATTAGGCTGTCC
TCAAACTCACATAACTCTGCCTCTGCTGGTCAGCTTAAAATAGTCATAAC
TATTGAATGTATTTAATATGCTGTTCTGAGGATAAAATATCAGTAGTTTG
TGTGTTATAAAAACAGTTATCCTATATAATCCACATCAACATTTGGTCAA
TATAAACATTTCACATCTGCCTGCCAGTAAGCCTACAGTTCCAAGAACAA
ATAAGTTCTATGAAGTAAAATTTATGCTAGTGGAGGTGATTTGCAAAGCT
TTCATCAGCCAGCTGAAAAAACTGGATATTATCCTAAAGATGGTGGGCAG
CCTTTGAACTATTTATATGGAGGCCAAATAGCATCAGAGTTGTAATTTAT
AAAACATCTTTTATATGTAAAACAGATGGGAAAGAAGTTAGTCTAGAGGT
AGTAGAAATCCAGTATTACAAATTTATTTAAAATAATTAACAAATGTTTC
TCTTGTAAATTAGGATAATAAATATTTACACCCGATAAAAAGTACCAGGC
CATATGGAAACCCTATCATTTGGGGGAAAACCCCAATTTGTAAATATTTA
AAAACGGCCCCAATCTCCCCGGGGGGGAAAAACAAAAATTTTTTGGCCCG
GGTGGTAATTAAAAAACCCCTTTTAATTAAAAAATTTTTTCCCCCCCCTG
GGGAATTTTATGTCCCCCAAAAAAAAAAAAAACAAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_p21.g1 MSMg01no141_p21.g1 CHROMAT_FILE:
MSMg01no141_p21.g1 PHD_FILE: MSMg01no141_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:04 2005
         (637 letters)



>mm_chrX_46636550_46637587
          Length = 1038

 Score = 1212 bits (627), Expect = 0.0
 Identities = 636/639 (99%), Gaps = 2/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgtgcaagtaaggaaaggtttctatacattaacacaacccaaagcactatgtgctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gttgtgcaagtaaggaaaggtttctatacattaacacaacccaaagcactatgtgctaaa 259

                                                                       
Query: 61  tccacatcagttttggactgttcttgtcatgctatgatcacatacaacttgccagaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tccacatcagttttggactgttcttgtcatgctatgatcacatacaacttgccagaggga 319

                                                                       
Query: 121 atgtaagaagtctaggtagagtgacaacgaccaacaggtgatttcaggaaaatgcaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgtaagaagtctaggtagagtgacaacgaccaacaggtgatttcaggaaaatgcaaaac 379

                                                                       
Query: 181 actaaaccacccaagggggttgatggctcttcctaacagagttccttatgagaactttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actaaaccacccaagggggttgatggctcttcctaacagagttccttatgagaactttgc 439

                                                                       
Query: 241 ttctatcatttatttaaattaatcttcatctgtaaaatagtaatatttttttt-ccgaga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 ttctatcatttatttaaattaatcttcatctgtaaaatagtaatatttttttttccgaga 499

                                                                       
Query: 300 cagggttttactgtgtagctccagctggcctgggacttagtatatacattaggctgtcct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cagggttttactgtgtagctccagctggcctgggacttagtatatacattaggctgtcct 559

                                                                       
Query: 360 caaactcacataactctgcctctgctggtcagcttaaaatagtcataactattgaatgta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caaactcacataactctgcctctgctggtcagcttaaaatagtcataactattgaatgta 619

                                                                       
Query: 420 tttaatatgctgttctgaggataaaatatcagtagtttgtgtgttataaaaacagttatc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttaatatgctgttctgaggataaaatatcagtagtttgtgtgttataaaaacagttatc 679

                                                                       
Query: 480 ctatataatccacatcaacatttggtcaa-tataaacatttcacatctgcctgccagtaa 538
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 680 ctatataatccacatcaacatttggtcaactataaacatttcacatctgcctgccagtaa 739

                                                                       
Query: 539 gcctacagttccaagaacaaataagttctatgaagtaaaatttatgctagtggaggtgat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcctacagttccaagaacaaataagttctatgaagtaaaatttatgctagtggaggtgat 799

                                                  
Query: 599 ttgcaaagctttcatcagccagctgaaaaaactggatat 637
           ||||||||||||||||||||||| |||||||||||||||
Sbjct: 800 ttgcaaagctttcatcagccagccgaaaaaactggatat 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space:   644556
Effective search space used:   644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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