BAC Information

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BAC

Clone NameMSMg01-142F09
ChromosomeX (Build37)
Map Location 132,881,890 - 132,882,218
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621352, EG331529, EG621380, EG666040, EG666045, AV320801, EG621467, Nxf7, 4930534P07Rik, 1700008I05Rik, 1700129I15Rik, Gprasp1, Gprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8, Tceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196
Downstream geneKir3dl2, LOC100041079, Kir3dl1, Tceal3, Tceal1, Morf4l2, BC065397, Glra4, LOC100041122, Plp1, Rab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142F09.T7 (MSMg01no142_f09.b1)MSMg01-142F09.TJ (MSMg01no142_f09.g1)
ACCAG346975AG346976
length1,2791,281
length of high quality
(start - end)
278 (131 - 408)642 (139 - 780)
definitionCHROMAT_FILE: MSMg01no142_f09.b1 PHD_FILE: MSMg01no142_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:52 2005CHROMAT_FILE: MSMg01no142_f09.g1 PHD_FILE: MSMg01no142_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCCCCTNNNNNCATCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTCTCGCACCTTCGCCCATTAAAGTCTCTACTAGTTAG
NCACAGCGGAGGCCCGCGCCCTCTTATAATGGCGATTGCCCGCGGCACAC
ACGGCTCTCCTCAGAGATTACTGGTGGCATGCACGAGATTGCTCGCAGTA
CATACCTGCTCTCCACATCTTCCCCTTTTTATTTTATTAAAACTTGAGGC
TGGTCTAGGCCTGTGTAACTTTGCCCATCCACTGTGGCTCCTGTCTTAGA
TCATTCCTCCAATGTCACAGCCTTTCCTGTCATAGGGTAACCCTATCGCC
ACCGGGCCCCGTGTCTTAGGTTGATCTGTGCATGAGGAAAGTTGCCCGTC
CCTGGATACTTTTTGTGCTATGTGACATTAACTACTAAATAAACTAGGGC
GAACTCTATAAAAGAGGACAGCCACCAATGTCAATTAATTTTTGAGCATA
GATAGCCAGATTTCAGGGAAGGCCCCTTGCTTGATGGCAGCAAGTGCTTG
GGTTATCAAAATCTTGTCACGTGTTTGTTGGGTTCTGAGCTTGCAAACCA
ACCAGAGCATGACCACAAGTCCACAACAGGTGGCAACACCAAATAAACCT
ACCCCCACCCATTCCTTAAAATAAGAAAAGGCAGATGAAATCCAGGAGGA
GAGGACCTCTGTCAATGACAGGTCCACTCGTGTTGAGTTGATCTTTAGAA
CGGCCACTCTAAGGACCCTCAAGGGTCTCATCGAATCTTTTCAGACCAGT
TTCCTGCAAGATATTAAGAAACCCTGCCTAGAACAATTAGCTGCATAAGT
AAAATTTCCTATTGGACACTGGTAATGCCCAGAAGCTTCCAGTTTTCTTT
CACAACCCTCCTGGTTCTTCTGGTATAAAACACCTATCTGATCTTTCCCC
CAGGCAAGGCACTGATTTCAAGTTCATCATCCCCCCCTTTAACTTTGTTC
CTAGCCAAAACTTTGGTAAGTGTTGGTTCTCCATCCAAACCTGCTCGAAT
CCTGATTTTTTATTTGTTGCCTGAATGAAACCCCCCCTTATCTCTATCAT
TATCCCTGCGCTTTCTTATATATCTCCTTCCCTTGGCTGATAATTTGTTT
CTGTTCCCTCCGTCCTCTTAAATATCCACATCTTCTCTCTTTTTTCCATC
ATTATTCTTTTTATTGGACGTTGTGTGTATTCTTCCTATATATTTCTTTT
CCCATTTGTGTTCCTCCTCTCTCCTCCTA
NCCATCCTTTTNNNCATCATTGGAGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAGAACACAGAACTTATGGCA
TAGCATTGAGGCAATCCCTTAAGGAAATAATTAGACATTAGAAAGTGCCC
CTGTGTTTCTGAATGATGCAAGACTTTATTGCTGTGTAGCCAAAGGGAAA
CCGAAATCCTTCAGAAAAATCAAAGAGAGGAGCCAAATAAACACCTTTCA
TCCAGCAAGATCAAAAACTGCTCTTAGAAAACTGGTAAGGTATGCAACAG
GCAAACAAAGTTTCTGTGTCAGTAAAGAAGGATCTTCACTTATAGCCTCA
ATTTTACACTTTCTTAGTGTATCAATTTCTATAAAACATGACCTCTCAAA
GAATCAGTTTATCTAAGGGTTTAATAAATCATTCTGTGCAACTATATACC
GGCTGCATCATTGGACTCAAACTGAATGGTCCATGTGTTGCCACTGATGT
GAGCCATTTGCCTGTTGTCCTTCAGGAGAATTATATGACCTTCAACAAGC
AATCCAAATATGAAAAACTAATAGGAACCCAACTCACTAACTGTGACAGA
CAAAGCAATTGTTTAAGGCCACAAGTGCTATTTTCAGGATTCCAACTTTT
GTCTGTGTTCTGAATCTAGTCAAACACAGATATAAGTATTTGAAATAAAA
CTTTCATTTGTACTATAAAGAGATTACTAAAGTTCTGCCCTTATTCTCTG
AACAATAGCATATTAATTGCACAATAATGATCTTGCAGTAAGTATTATTT
AGTAATTTAGAGATGTCTTTCAGCATCCAGTTATCACAGATTTATCTAGG
AGAGGTAAATTTAATATTTGAAATAATATCTGTGATATCTATTCCATGCA
TTCTATGTTATATTTCAAATATAAACACCTGTTTCTTTCCCCTAACAAAT
ATGCCCGTTGTTTGTTAAGCCCCCATAACCTGTTGAGGAACAAGGTTTAT
GGAAAAACCCTTTCCCATTCCGTTATGAAGACAGAAAACAAACATCCCCT
GCCACACTCCCCCGGAATAACCTTTAGGTTAAAAGGGATTCTTTCCCTGA
ATTAAAAGTGGGACTCTCCCAATAAATATTTCTCTCAAAAAACACACCTG
TGTTCTTATATTTCCCAACCACAGTTTTTGTCCCCTACAACAAATCCTCT
TGTGATAGAAACCCCTTTTAATGAGGTGCCTCCAAACCGGCTTTTAACTT
CTTATAGCCTCTTAATATGATAGATTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_f09.g1 MSMg01no142_f09.g1 CHROMAT_FILE:
MSMg01no142_f09.g1 PHD_FILE: MSMg01no142_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:53 2005
         (642 letters)



>mm_chrX_132881433_132882472
          Length = 1040

 Score =  253 bits (131), Expect = 2e-71
 Identities = 283/339 (83%), Gaps = 18/339 (5%)
 Strand = Plus / Plus

                                                                       
Query: 258 tcaaagaatc-agtttatctaagggtttaataaatcattctgtgcaa-----ctatatac 311
           |||||||||| | || | |||||||||| | ||||||||||||||||     ||     |
Sbjct: 458 tcaaagaatcaacttga-ctaagggtttca-aaatcattctgtgcaattgtgct-----c 510

                                                                       
Query: 312 cggctgcatcattggactcaaactgaatggtccatgtgttgccactgatgtgagccattt 371
           | || | ||||||||||| ||| ||||||| |||||||||| ||||  ||||||||||| 
Sbjct: 511 cagcggaatcattggactgaaagtgaatggcccatgtgttgacacttctgtgagccatta 570

                                                                       
Query: 372 gcctgttgt-ccttcaggagaattatatgacctt-caacaagcaatccaaatatgaaaaa 429
           | || ||||  ||||||||||||||||||||||| ||| ||||  |||||||||||||| 
Sbjct: 571 gactattgtggcttcaggagaattatatgaccttacaa-aagctttccaaatatgaaaat 629

                                                                       
Query: 430 ctaataggaacccaactcactaactgtgacagacaaagcaattgtttaaggccacaagtg 489
            | ||||||||||||||  ||||||||||||||||||||||||||||||||||| | |||
Sbjct: 630 tttataggaacccaacttgctaactgtgacagacaaagcaattgtttaaggccataggtg 689

                                                                       
Query: 490 ctattttcaggattccaacttttgtctgtgttctgaatctagtcaaacacagatataagt 549
           |||  ||||||| ||||| | | ||||||||| ||||| |||||||||||||||| ||||
Sbjct: 690 ctacattcaggagtccaaatgt-gtctgtgttttgaatgtagtcaaacacagataaaagt 748

                                                  
Query: 550 atttgaaataaaactttcatttgtactataaagagatta 588
           |||| ||||| ||||| ||| |||||| ||| |||||||
Sbjct: 749 atttaaaatacaacttgcatctgtactctaa-gagatta 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1040
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1030
Effective search space:   650960
Effective search space used:   650960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)