Query= MSMg01no143_b12.b1 MSMg01no143_b12.b1 CHROMAT_FILE:
MSMg01no143_b12.b1 PHD_FILE: MSMg01no143_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:33 2005
(657 letters)
>mm_chrX_134652830_134653887
Length = 1058
Score = 1236 bits (639), Expect = 0.0
Identities = 648/651 (99%), Gaps = 1/651 (0%)
Strand = Plus / Minus
Query: 5 gaattctggtagtgaggcttaatagcatgatttttaactatgtggccagttctatgtaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gaattctggtagtgaggcttaatagcatgatttttaactatgtggccagttctatgtaat 796
Query: 65 taattatattttcctagaacaaatttataaaaaggatactaggaacacacatagaatttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 taattatattttcctagaacaaatttataaaaaggatactaggaacacacatagaatttt 736
Query: 125 acctaagttcaaaaaaatattatcaaatatgttgaagtggcaatttatttaaaggttgtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 acctaagttcaaaaaaatattatcaaatatgttgaagtggcaatttatttaaaggttgtt 676
Query: 185 cttcgcctttagacaatacaaggactgaatttccgtgagttacatgtccagtgaaatctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cttcgcctttagacaatacaaggactgaatttccgtgagttacatgtccagtgaaatctt 616
Query: 245 tgtttacaacttgctgtttctcaaaggttaagaacaggagagggaaagggctaagatgtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgtttacaacttgctgtttctcaaaggttaagaacaggagagggaaagggctaagatgtt 556
Query: 305 atcaaccacaatctcttaaagaatgctaaaatgttatacatttctcccaaattatcaaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atcaaccacaatctcttaaagaatgctaaaatgttatacatttctcccaaattatcaaag 496
Query: 365 tcagtggataaaacagaatttgattcagaggttttattcataggcatttgtatacattct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tcagtggataaaacagaatttgattcagaggttttattcataggcatttgtatacattct 436
Query: 425 ctaggcaaaatgtaatttacttccaatgtcaatattttggtga-ttttttgataattacg 483
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 435 ctaggcaaaatgtaatttacttccaatgtcaatattttggtgatttttttgataattacg 376
Query: 484 gcgaatttatgaaagtgtagatgcaacaacagaaaacaatcatagagattctaatactaa 543
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtgaatttatgaaagtgtagatgcaacaacagaaaacaatcatagagattctaatactaa 316
Query: 544 attgtaagtaaaatggaaatatttttatagaacaaacttcaactattcaatagttgtatg 603
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 315 attgtaagtaaaatggaaatatttttatagaacaaacttcaactatgcaatagttgtatg 256
Query: 604 tacatcatgcttttagctgattcaggtttcatatgagcagaattatacttt 654
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tacatcatgcttttagctgattcaggtttcatatgagcagaattatacttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1058
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1048
Effective search space: 678056
Effective search space used: 678056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_b12.g1 MSMg01no143_b12.g1 CHROMAT_FILE:
MSMg01no143_b12.g1 PHD_FILE: MSMg01no143_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:33 2005
(509 letters)
>mm_chrX_134626506_134627414
Length = 909
Score = 961 bits (497), Expect = 0.0
Identities = 506/509 (99%)
Strand = Plus / Plus
Query: 1 ttgctctgtgcctagcattgtgtttgttactgaagaaatatgatattattccctttgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctctgtgcctagcattgtgtttgttactgaagaaatatgatattattccctttgcca 260
Query: 61 ttaaagagcattcccttgaggaggacacagattcatgtctagctaactataatgtcatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaagagcattcccttgaggaggacacagattcatgtctagctaactataatgtcatgt 320
Query: 121 ctgttctcaatgagcatttccaacaacagacattatttgctgtcatttatctctttctct 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgttctcaacaagcatttccaacaacagacattatttgctgtcatttatctctttctct 380
Query: 181 ttatcacttagctattcagcatacagaatgttaaagagcagatggtgttaagctgtctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatcacttagctattcagcatacagaatgttaaagagcagatggtgttaagctgtctat 440
Query: 241 tttaggactcgttgtaaaagttcattcctgagcttacatttaacacactatcttaatgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaggactcgttgtaaaagttcattcctgagcttacatttaacacactatcttaatgag 500
Query: 301 aaaaccatttgcagagcctttatggagtacttactcttagtgggtaccttgagatggata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaccatttgcagagcctttatggagtacttactcttagtgggtaccttgagatggata 560
Query: 361 taaatgagtggggctttgtggaagtctactagatttcaagtcggaaatgttgaacttgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatgagtggggctttgtggaagtctactagatttcaagtcggaaatgttgaacttgag 620
Query: 421 tcagaagcttgctgctgaccagttgagtgaccttggatgagtcacttagctgcattgctg 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaggagcttgctgctgaccagttgagtgaccttggatgagtcacttagctgcattgctg 680
Query: 481 ggaatagcatattaataaaagtgggaaaa 509
|||||||||||||||||||||||||||||
Sbjct: 681 ggaatagcatattaataaaagtgggaaaa 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
