BAC Information

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BAC

Clone NameMSMg01-144D02
ChromosomeX (Build37)
Map Location 38,524,722 - 38,700,639
singlet/doubletdoublet
Overlap geneLOC385344
Upstream geneLOC100039769
Downstream geneGria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144D02.T7 (MSMg01no144_d02.b1)MSMg01-144D02.TJ (MSMg01no144_d02.g1)
ACCAG348330AG348331
length708707
length of high quality
(start - end)		658 (51 - 708)614 (80 - 693)
definitionCHROMAT_FILE: MSMg01no144_d02.b1 PHD_FILE: MSMg01no144_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:57 2005CHROMAT_FILE: MSMg01no144_d02.g1 PHD_FILE: MSMg01no144_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,524,722 - 38,525,375)(38,700,295 - 38,700,639)
sequence
NNNNTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGGCCCGATGCCCTCCAGTGATAGATTCTAACCTAAGAG
AGAGTTGTCAGATGAAATAAACCATTTCCAACACAAGTTCCTTTATTGTT
AAGGTTTTCAGAGCAATAGAGGCCTAAGACATTCTGACACACCATTCAAT
ACTCATTTAACACATTCTCTTTTAAGACATACTGTTCAGAAACTATGTTA
GGTATTAGTTAAGTGAGAGGAAAGACAGGCATATTGCCTGACCTTAGTGA
ACTATTCATTCCATAGACATTTATGGCTTATTTAACTGTAAGGCATAGCT
CGTCTTAGTTTACTTAGAGTGAAAACTACTTATTTGAATAATCTCTTGTG
TTTTCCTTAATTATTCAGTGGTGTAGGTCATTGGACATTAGGTTGAAAAT
AGTCACCAAATAAGCACAAAAAAGACATATCTTATTCAGAAACAAACAGT
ATGTCAAGAGCTATAGATGAGTCTGATATATACAAATAATTTTCTAATTA
CAGTAGGATTCATGAGATAAGCAATAAATTCAAAGCTGGTAACTAAGATT
GGAATAATATCTTCTGTAGTTAGAATCTAGAATGTGTTAAAGGCTTGGTC
TCTAGGAATATAGTAAAATCTTAGAAAGATAAGGCCTAGAAGGGGTCCTT
ATAGGGAT

NNNTTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGATTAGTTATTAGAATG
AGCTGAAAGAATAAAGGTGAGAGCTGTTTAGTCATTGAGACTGGCAAAAA
GCTTCTAGTTCCAATGCAGCTAAGGGACAGTCAGGATGAACATAAAATTA
GCATGAACCATGTTTTATTATTTCTTTTATTTTTGAGATTATAATTATAT
CATTTTCCTCTTCTCTTTTCTCCATCCAAGCCCTCCCATAAACCACCTCA
TGCTTTCCCTATAAGTCATGGCCTCTCTATTCATTAATTCTTATTACATA
CATATATTCACATGTACATAGATATATATTCCTAAATGTGTCATGCTTAC
TCTATTAATGCTACTTGTATGTATAGTTTCAGGCCTGACCCTTTGATATT
GAACGAGCCATTGGTGTGTCTGTCCCTGCTGAAGACTGTTTCTTCTTTGC
TCAGTGTTCTTTAGTTGCCTGTAATTCATTGTGTAGGGTTAAGGTCTCTT
GGCTTTTCCTGCATCCACATTGGATGCCTTTTGTCTCTATTCATCTCAAG
TTGGATATATCTATAAAACAGTTGCTGCACCTAAAGTTTATAGAACGTTG
ATGAAGAGGAGGTAGAAAGATCACATGTGTTAGAGAATCAGAGAGTTTGC
TGTAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_d02.b1 MSMg01no144_d02.b1 CHROMAT_FILE:
MSMg01no144_d02.b1 PHD_FILE: MSMg01no144_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:57 2005
         (658 letters)



>mm_chrX_38524518_38525575
          Length = 1058

 Score = 1234 bits (638), Expect = 0.0
 Identities = 650/654 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggcccgatgccctccagtgatagattctaacctaagagagagttgtcagatg 64
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcttggcccgatgtcctccagtgatagattctaacctaagagagagttatcagatg 264

                                                                       
Query: 65  aaataaaccatttccaacacaagttcctttattgttaaggttttcagagcaatagaggcc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 aaataaaccatttccaacacaagttcctttattgttaaggttttcagagcaatagaagcc 324

                                                                       
Query: 125 taagacattctgacacaccattcaatactcatttaacacattctcttttaagacatactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagacattctgacacaccattcaatactcatttaacacattctcttttaagacatactg 384

                                                                       
Query: 185 ttcagaaactatgttaggtattagttaagtgagaggaaagacaggcatattgcctgacct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcagaaactatgttaggtattagttaagtgagaggaaagacaggcatattgcctgacct 444

                                                                       
Query: 245 tagtgaactattcattccatagacatttatggcttatttaactgtaaggcatagctcgtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagtgaactattcattccatagacatttatggcttatttaactgtaaggcatagctcgtc 504

                                                                       
Query: 305 ttagtttacttagagtgaaaactacttatttgaataatctcttgtgttttccttaattat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttagtttacttagagtgaaaactacttatttgaataatctcttgtgttttccttaattat 564

                                                                       
Query: 365 tcagtggtgtaggtcattggacattaggttgaaaatagtcaccaaataagcacaaaaaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcagtggtgtaggtcattggacattaggttgaaaatagtcaccaaataagcacaaaaaag 624

                                                                       
Query: 425 acatatcttattcagaaacaaacagtatgtcaagagctatagatgagtctgatatataca 484
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacatcttattcagaaacaaacagtatgtcaagagctatagatgagtctgatatataca 684

                                                                       
Query: 485 aataattttctaattacagtaggattcatgagataagcaataaattcaaagctggtaact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aataattttctaattacagtaggattcatgagataagcaataaattcaaagctggtaact 744

                                                                       
Query: 545 aagattggaataatatcttctgtagttagaatctagaatgtgttaaaggcttggtctcta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagattggaataatatcttctgtagttagaatctagaatgtgttaaaggcttggtctcta 804

                                                                 
Query: 605 ggaatatagtaaaatcttagaaagataaggcctagaaggggtccttatagggat 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggaatatagtaaaatcttagaaagataaggcctagaaggggtccttatagggat 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no144_d02.g1 MSMg01no144_d02.g1 CHROMAT_FILE:
MSMg01no144_d02.g1 PHD_FILE: MSMg01no144_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:57 2005
         (614 letters)



>mm_chrX_38700295_38701308
          Length = 1014

 Score =  667 bits (345), Expect = 0.0
 Identities = 345/345 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggattagttattagaatgagctgaaagaataaaggtgagagctgtttagtcattgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttaggattagttattagaatgagctgaaagaataaaggtgagagctgtttagtcattgag 286

                                                                       
Query: 61  actggcaaaaagcttctagttccaatgcagctaagggacagtcaggatgaacataaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 actggcaaaaagcttctagttccaatgcagctaagggacagtcaggatgaacataaaatt 226

                                                                       
Query: 121 agcatgaaccatgttttattatttcttttatttttgagattataattatatcattttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 agcatgaaccatgttttattatttcttttatttttgagattataattatatcattttcct 166

                                                                       
Query: 181 cttctcttttctccatccaagccctcccataaaccacctcatgctttccctataagtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cttctcttttctccatccaagccctcccataaaccacctcatgctttccctataagtcat 106

                                                                       
Query: 241 ggcctctctattcattaattcttattacatacatatattcacatgtacatagatatatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ggcctctctattcattaattcttattacatacatatattcacatgtacatagatatatat 46

                                                        
Query: 301 tcctaaatgtgtcatgcttactctattaatgctacttgtatgtat 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  tcctaaatgtgtcatgcttactctattaatgctacttgtatgtat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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