BAC Information

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BAC

Clone NameMSMg01-145L14
ChromosomeX (Build37)
Map Location 49,106,208 - 49,106,727
singlet/doubletsinglet
Overlap genenone
Upstream gene2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356, Hs6st2
Downstream geneUsp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3, Kis2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145L14.T7 (MSMg01no145_l14.b1)MSMg01-145L14.TJ (MSMg01no145_l14.g1)
ACCAG349450AG349451
length694693
length of high quality
(start - end)
523 (75 - 597)339 (76 - 414)
definitionCHROMAT_FILE: MSMg01no145_l14.b1 PHD_FILE: MSMg01no145_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:54 2005CHROMAT_FILE: MSMg01no145_l14.g1 PHD_FILE: MSMg01no145_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXANATGCAAGAGAAGCCG
CGGAATTCAGTTGATTCCCATTTACAAAACCAAATCCTGACTAACAACAA
CAACAAAAAAGTTTCTATGAAATGACCAACTAAACAGTAAAAGGTACTGC
ACATACAAAAGCAGGATCTCCGAAATGAATTGAACATTAGATTCTCCATT
GGATTATTGCCCTCTGTAATAATACTGGGGATTAGTAAATCTGCAACAGA
GTCCACATATCTCATGAGTTCCCACCTTCCTGATGGTACTGATTAGGCCG
CTCTTCAAACCACTGCATCAGAATACAGACGGTAGGGGTGTGGTCATGGC
TTTGCTCTTATTTGGCAAGAGTAGAGTCCAGGCTTCTACTTGGTCCCTGA
TGTACTTGTGAGTCCATTCTCACACTCTGTGGGAACAGAAGTAGAAGCAC
CTTCAAGATTGACCAGAAAGAGATTCTGTGGTGAAGGGAATCTGGCTTCC
AGAAGATATTTGACCAGAACAAGAAATCTCACTGTCTCAAGATCTCAATG
GTATTGTAGCATGTACAGTGCTTCCATTTTTGATGATGAGTTGATAAGCA
GCTGAGAAGCTGCCATTGGAACCTAGAAGTAATCAAAAAACTGTTGATGC
CATAAGCAAGTGAGGAACCTAGAATGAGAGGGCTGCAGTCAATG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGACTGAGGCATGGGCTTGCACT
AGAAACAGATGGGGTTCTAGAGCTGAAAAGAGAAGTGGACACTTGCCCAC
ATCCCTAATCAAGAAGCAACCTCCAATTGATAATCACTTGCATCTATATT
ATGACTTCCAGTTTAGTGTTTTGATGCGATTCCTGGCTGTGGCCAAGGAC
TGCATCTGTTTCTGTGCCTTTTCTTCAGCTCTTTTCCTTTTGCTTGTTTT
TTTTCCTCTTCTGATGTGTTAATTTTTTTCTATCTTATTATATTTTATTT
TATTATTATGTCTTAGAAGCTAGTTTCTTTTCTAATGAGAGACAGGAAAG
GAGGAGAGGAATGGGGAACACCAAAGGAAAGGAAACAATAACCAGCAAGT
CGTCCAAGGAAAACAATCTATTCTTAATAAAAGGAAAAATCCACACCCTC
AATAGTGTGTGTACCTCCACTCATAGAAAATTAGTTATTGGCCACCCCTA
TTACCAAAGTAAGGGCAAACTTGGTAGACACAAACTGATACTCTTGGTTT
GTATACTCTGAAAAATATATTTTATGACTTCAGCTCACTGAACTTTGTAA
GAACATATTGTTTGTTCGATTGTTTCCCTCTACTCTAGTAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_l14.b1 MSMg01no145_l14.b1 CHROMAT_FILE:
MSMg01no145_l14.b1 PHD_FILE: MSMg01no145_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:54 2005
         (523 letters)



>mm_chrX_49106008_49106930
          Length = 923

 Score =  982 bits (508), Expect = 0.0
 Identities = 517/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaccaaatcctgactaacaacaacaacaaaaaagtttctatgaaatgaccaactaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaaccaaatcctgactaacaacaacaacaaaaaagtttctatgaaatgaccaactaaa 260

                                                                       
Query: 61  cagtaaaaggtactgcacatacaaaagcaggatctccgaaatgaattgaacattagattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtaaaaggtactgcacatacaaaagcaggatctccgaaatgaattgaacattagattc 320

                                                                       
Query: 121 tccattggattattgccctctgtaataatactggggattagtaaatctgcaacagagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccattggattattgccctctgtaataatactggggattagtaaatctgcaacagagtcc 380

                                                                       
Query: 181 acatatctcatgagttcccaccttcctgatggtactgattaggccgctcttcaaaccact 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 acatatcccatgagttcccaccttcctgatggtactgattaggccgctcttaaaaccact 440

                                                                       
Query: 241 gcatcagaatacagacggtaggggtgtggtcatggctttgctcttatttggcaagagtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatcagaatacagacggtaggggtgtggtcatggctttgctcttatttggcaagagtag 500

                                                                       
Query: 301 agtccaggcttctacttggtccctgatgtacttgtgagtccattctcacactctgtggga 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 agtccaggcttctacttggtccctgatgtacttgtgagtccattctcagactctgtggga 560

                                                                       
Query: 361 acagaagtagaagcaccttcaagattgaccagaaagagattctgtggtgaagggaatctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagaagtagaagcaccttcaagattgaccagaaagagattctgtggtgaagggaatctg 620

                                                                       
Query: 421 gcttccagaagatatttgaccagaacaagaaatctcactgtctcaagatctcaatggtat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcttccagaagatatttgaccagaacaagaaatctcactgtctcaagatctcaatggtat 680

                                                   
Query: 481 tgtagcatgtacagtgcttccatttttgatgatgagttga 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtagcatgtacagtgcttccatttttgatgatgagttga 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)