Query= MSMg01no145_p14.b1 MSMg01no145_p14.b1 CHROMAT_FILE:
MSMg01no145_p14.b1 PHD_FILE: MSMg01no145_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:13 2005
(549 letters)
>mm_chrX_5618574_5619522
Length = 949
Score = 949 bits (491), Expect = 0.0
Identities = 533/547 (97%), Gaps = 2/547 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctgagtgatctcaggagccaagcagccagaacaagggaaggcacagagacagg 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgagtgagctgaggagccaagcagccagaacaagggaaggcacagagacagg 263
Query: 64 agctggggggaagctcaaggagacttcctgagctgggtagtccattctatgaaccctaga 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 agctggggggaagctcaaggagacttcctgagctgggcagtccattctatgaaccctaga 323
Query: 124 atttgatctcatgtgcctatgtaacaactactagatactgaaaagctgcatagctgtgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttgatctcatgtgcctatgtaacaactactagatactgaaaagctgcatagctgtgaa 383
Query: 184 tcttaatgttatccttgaccatatgcaatggatgctctctgcttcaaagggatttttaaa 243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttaatgttatccttgcccatatgcaatggatgctctctgcttcaaagggatttttaaa 443
Query: 244 agattgtacagaagaagataaatgcaatgcctattgcatcatggatgatgagtactgtgt 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 agattgtacagaagaagataaatgcaatgcctattgcagcatggatgatgagtactgtgt 503
Query: 304 ctaaagattagtct-agggttcatgatgtttgttggtaaaatgtggcttttcgctcagtt 362
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctaaagattagtctcagg-ttcatgatgtttgttggtaaaatgtggcttttcgctcagtt 562
Query: 363 tgtttaataccacccactgtttccagtctacaaaatatcacatcattcataaaggcacag 422
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgtttaatactagaaattgtttccagtctacaaaatatcacatcattcataaaggcacag 622
Query: 423 aagagtctctgaatatagactgtaatacaatgggaatccacataaggaatgctggggtct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagagtctctgaatatagactgtaatacaatgggaatccacataaggaatgctggggtct 682
Query: 483 tttgtcttccagtcattgcatccctgggggagcatttgctgaattacctactggcgatcc 542
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taagtcttccagtcattgcatccctgggggagcatttgctgaattacctactggcgatcc 742
Query: 543 actataa 549
|||||||
Sbjct: 743 actataa 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_p14.g1 MSMg01no145_p14.g1 CHROMAT_FILE:
MSMg01no145_p14.g1 PHD_FILE: MSMg01no145_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:13 2005
(574 letters)
>mm_chrX_5662299_5663272
Length = 974
Score = 1079 bits (558), Expect = 0.0
Identities = 570/574 (99%)
Strand = Plus / Plus
Query: 1 ttgtggtcatggtgtctcttcacagcagtagaatactgcctacaacatacatttatcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtggtcatggtgtctcttcacagcagtagaatactgcctacaacatacatttatcagg 260
Query: 61 tttttttggaacaagattatccaactttaaaagaaaaagtatttgtaaaaaatgtaaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttttggaacaagattatccaactttaaaagaaaaagtatttgtaaaaaatgtaaagc 320
Query: 121 ctgcacatatcaaatattagaataaattagtttaatatagtcatgacctataaaatcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcacatatcaaatattagaataaattagtttaatatagtcatgacctataaaatcaat 380
Query: 181 attataaaactgaattatatttctctatactaagatcagaaatgatgtaaagaaaaaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attataaaactgaattatatttctctatactaagatcagaaatgatgtaaagaaaaaatt 440
Query: 241 aaaatgccatttcctgtaccacgagaaagtatcaagcacaaaataataaaatctcacaag 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 aaaatgccatttcctgtaccacgagaaaatatcaagcacaaaataataaaatctcacaag 500
Query: 301 attcttggacagaaatcactgtatcattcttgaaagagattaaagcacaccgctattaat 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 501 attcttggacagaaatcactgtatcattcttgaaagagattaaagcaaaccgccattaat 560
Query: 361 ccaaggtgcagcatggctaactgtaggttagaacagagcttcttcaaactttttctgttc 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaggtgcagcatggctaactgtgggttagaacagagcttcttcaaactttttctgttc 620
Query: 421 acgattcccgctaataataaatcataaatttatttttaaatagttctctaattacataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acgattcccgctaataataaatcataaatttatttttaaatagttctctaattacataaa 680
Query: 481 atcatgtcatttactaacgatgattgtaaactttcatactaacaggatggatggccctct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcatgtcatttactaacgatgattgtaaactttcatactaacaggatggatggccctct 740
Query: 541 ttatttttgcataaagaatcaaatcttcactgaa 574
||||||||||||||||||||||||||||||||||
Sbjct: 741 ttatttttgcataaagaatcaaatcttcactgaa 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
