BAC Information

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BAC

Clone NameMSMg01-146C09
ChromosomeX (Build37)
Map Location 94,296,859 - 94,363,714
singlet/doubletdoublet
Overlap genenone
Upstream geneMsn, Psmb7-ps1, LOC668221, Vsig4, B230358A15Rik, Heph, Gpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l
Downstream geneEda2r, LOC668244, Ar
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146C09.T7 (MSMg01no146_c09.b1)MSMg01-146C09.TJ (MSMg01no146_c09.g1)
ACCAG349765AG349766
length1,2511,261
length of high quality
(start - end)		826 (84 - 909)745 (86 - 830)
definitionCHROMAT_FILE: MSMg01no146_c09.b1 PHD_FILE: MSMg01no146_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:34 2005CHROMAT_FILE: MSMg01no146_c09.g1 PHD_FILE: MSMg01no146_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,362,982 - 94,363,714)(94,296,859 - 94,297,603)
sequence
NCCCTTTCTTTTNNNGCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCTGCTTGCTCATTCACCCTTTGGGTTGTTCTATTCACACTTA
GCTAGCTAGCTCTCACATACAGGCCAGGATCACCTGCCTAGATGATAGTG
CCATTCACAGTGGGCTGGGCCATCTTATATCAATTAACAATAAATATAGT
ATTATCACAGACCCAATTTTATCTAGGTAGTTCTTCACTTGAGGTTTTTC
TTCTCAGTACTCTAGACTATGTCTACTTGACATCAAAATTAACTACAACA
ATGAATTAAATCCTATTCATAGCCCAGGTGCCTAATTTATGAAGGCAATG
AAAGTTACTGCTAGCTTTAGTTTGGACACAAAGATATAGTCCATGCAGAG
CTAGTGTCTTAGTCAGGGTTTCTATTCCTGAACAAACATCATGACCAAGA
AGCAAATTGGGGAGGAAAGGGTTTATTCAGCTTACATTTCTACATTGCTG
TTCATCACTGAAAGAAGTCAGGACTGGAACTCAAGCAGATCAGGGAGCAG
GAACTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCC
TAGCTTGCTCTCTTATAGAACCCAAGACTGCCAGCCCAGAGATGGTCCCA
CCCATAAGGGGCCCTTCCACATTGATCACAAATTGAGAAAATGCCTTACA
GTTGGATCTCATAGTGGCATTTCCTCAACTTAAGCTCCTTTCTCTGTGAT
AACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAGCTAGTAAG
CAGTTCCATTTTAGAGAAGATTTTTGATTTCTAACACCAGAGAGTTGGTC
TTTATGCTGGCAAATAATTTCCGCAAAGATGACTTTTTTTTAACCAGATA
GTGGGTAGACACTTGAAATTTTTGAGGATTGGTTAGGTATAATAGCCAAA
ATATCACTTTAGATATCACAGGTCCCAACTCCCACACTGATGTTAAATTA
GGGGGAAAATTATTATTTGAATTCCGAAGGGTTTTGTTTCCGGGAGCTAC
TAAACTCCTTCTCTCTAGCGTAAAACTAGTACTTTTTTACCATTGGGGTT
GTTTGTCGGCCTTTTGTTTTTTAGGAATTGGTAAGGGAGAACCAAAAACC
CCCTCAAAGAAGGAAGGTGGGTGAAATTTCTTTCTCTAATGAAACCCCCC
CGTCATTTTGTTATTTTAAAAAGAAAAACAATCCTCGGGTATTATTTTAT
G

CCCGTTTTTTTNNATAGAAGTGATGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTTTGATTGGTGTAAGGTGGAATC
TCAGGTTTGTTTTGATCCGCATTTCTCTGATTACTACGGACTTTGAATAT
TTCTTTAGGTTCTTCTCAGACATTCGAGATTGGTCAGTTGTGAACTCTTG
GTTTAGTTCTATACCCCCAACTTTTATTTTTCCCATTGGGTTGTTTGTTT
TTGTTTTTGTTTTGTATTGTTTGAACAAAACTTCTTGAATTCTTTATATA
TTTCGGATATTAGCCCTCTATATGATTAGTGAAGAGTTTTTCCCAATATG
TAGGTTACCGATTTTTCTTATTGACTGTCCTATGCCTTACAAAAGCTTTT
CAGTTTCATGAGGTCCCATTTGTCAATTCTTGCTCTTAGAGCATGAGCTA
TTGGAGTTCTACTTAGGAAATTTTCCCCTGTGCCAATGAGTTCAAGGTTC
TTTCCCACTTTCTCTTCTATTAGAGTCAATGTGTCTGGTTTTATGTTAAG
GTCCTTGATCCACTTGGACTTGAGCTTGGTACAAGGTGACAAATATGGAT
CTATTTTCATTATTTTACATACAGACAGCCAGTAAGACCATTTAGTTTTA
TTATTTGGGAATTTTATAGAGTCAGTAGTAGCAGATATCAGTTGTTATGT
ACTATTTGTTGGCTACAACAGTATCATTGTACACATAAATTCATAATACC
TGTAAAACATCAAGGCATCAAAATCTCAGCATAGCTTCTAGCCTTTTATT
GTTTAGTTTTTGTTATGCACCCATCTCATAGATATACACATACAAATATG
TATGTGTATATGCATACATTCAGTTACCTATAGCATTCCTTGTATGTATA
AGATTTCAGTGTTGCCTATTTTGAATTTGAGAAAGAAAGCACGGGAAGGA
AATGTTTTATGGCATTTTTTCATACTATTATATCCTCTTGTTTTATCTCT
TCCTCTCTTTTTTTTTTTTCTTAAAATTATCCTCCTTCTTCCTATCATTT
CTCTTCCTTTCTTTTTTCTTCCCTCCCTGATTTATTTTTTTTATTTGTGA
TTTTCTTTCTTTATCTTATTTCTTCATATTTTTTTTTTCCAGTCTCTCTA
TAATTTCATTTGCTTTTTCTCTATTTCTATTCTTTTATCTTTTTTTCTGT
CCTCATCCATATGTTTGTTTTTNTATTTTTCCTTCCTTTCATTATTATTC
TTCCTTTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_c09.b1 MSMg01no146_c09.b1 CHROMAT_FILE:
MSMg01no146_c09.b1 PHD_FILE: MSMg01no146_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:34 2005
         (826 letters)



>mm_chrX_94362982_94364207
          Length = 1226

 Score = 1371 bits (709), Expect = 0.0
 Identities = 727/733 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttctattcacacttagctagctagctctcacatacaggccaggatcacctgcctagat 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 733 tgttctattcacacttagctagctagctctcatatacaggccaggatcacctgcctagat 674

                                                                       
Query: 61  gatagtgccattcacagtgggctgggccatcttatatcaattaacaataaatatagtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 673 gatagtgccattcacagtgggctgggccatcttatatcaattaacaataaataaagtatt 614

                                                                       
Query: 121 atcacagacccaattttatctaggtagttcttcacttgaggtttttcttctcagtactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atcacagacccaattttatctaggtagttcttcacttgaggtttttcttctcagtactct 554

                                                                       
Query: 181 agactatgtctacttgacatcaaaattaactacaacaatgaattaaatcctattcatagc 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 553 agactatgtctacttgacatcaaaattaactacaacaatgatttaaatcctattcatagc 494

                                                                       
Query: 241 ccaggtgcctaatttatgaaggcaatgaaagttactgctagctttagtttggacacaaag 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccaagtgcctaatttatgaaggcaatgaaagttactgctagctttagtttggacacaaag 434

                                                                       
Query: 301 atatagtccatgcagagctagtgtcttagtcagggtttctattcctgaacaaacatcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atatagtccatgcagagctagtgtcttagtcagggtttctattcctgaacaaacatcatg 374

                                                                       
Query: 361 accaagaagcaaattggggaggaaagggtttattcagcttacatttctacattgctgttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 accaagaagcaaattggggaggaaagggtttattcagcttacatttctacattgctgttc 314

                                                                       
Query: 421 atcactgaaagaagtcaggactggaactcaagcagatcagggagcaggaactgatgcaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atcactgaaagaagtcaggactggaactcaagcagatcagggagcaggaactgatgcaga 254

                                                                       
Query: 481 ggccatggagggatgttctttactggcttgcttcccctagcttgctctcttatagaaccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggccatggagggatgttctttactggcttgcttcccctagcttgctctcttatagaaccc 194

                                                                       
Query: 541 aagactgccagcccagagatggtcccacccataaggggcccttccacattgatcacaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 193 aagactgccagcccagagatggtcccacccataaggggcccttccaccttgatcacaaat 134

                                                                       
Query: 601 tgagaaaatgccttacagttggatctcatagtggcatttcctcaacttaagctcctttct 660
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 133 tgagaaaatgccttacagttggatctcatggtggcatttcctcaacttaagctcctttct 74

                                                                       
Query: 661 ctgtgataactccagctgtgtcaagttgacacaaaactagccagtacagctagtaagcag 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  ctgtgataactccagctgtgtcaagttgacacaaaactagccagtacagctagtaagcag 14

                        
Query: 721 ttccattttagag 733
           |||||||||||||
Sbjct: 13  ttccattttagag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 826
Length of database: 1226
Length adjustment: 10
Effective length of query: 816
Effective length of database: 1216
Effective search space:   992256
Effective search space used:   992256
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no146_c09.g1 MSMg01no146_c09.g1 CHROMAT_FILE:
MSMg01no146_c09.g1 PHD_FILE: MSMg01no146_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:35 2005
         (745 letters)



>mm_chrX_94296659_94297803
          Length = 1145

 Score = 1379 bits (713), Expect = 0.0
 Identities = 737/745 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtaaggtggaatctcaggtttgttttgatccgcatttctctgattactacggactttg 60
           |||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||
Sbjct: 201 gtgtaaggtggaatctcaggtttgttttgatttgcatttctctgattactaaggactttg 260

                                                                       
Query: 61  aatatttctttaggttcttctcagacattcgagattggtcagttgtgaactcttggttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatttctttaggttcttctcagacattcgagattggtcagttgtgaactcttggttta 320

                                                                       
Query: 121 gttctatacccccaacttttatttttcccattgggttgtttgtttttgtttttgttttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctatacccccaacttttatttttcccattgggttgtttgtttttgtttttgttttgt 380

                                                                       
Query: 181 attgtttgaacaaaacttcttgaattctttatatatttcggatattagccctctatatga 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 attgtttgaacaaaacttcttgaattctttatatatttcagatattagccctctatatga 440

                                                                       
Query: 241 ttagtgaagagtttttcccaatatgtaggttaccgatttttcttattgactgtcctatgc 300
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 441 ttagtgaagagtttttcccaatatgtaggttaccgatttttcttattggctgtcctttgc 500

                                                                       
Query: 301 cttacaaaagcttttcagtttcatgaggtcccatttgtcaattcttgctcttagagcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttacaaaagcttttcagtttcatgaggtcccatttgtcaattcttgctcttagagcatg 560

                                                                       
Query: 361 agctattggagttctacttaggaaattttcccctgtgccaatgagttcaaggttctttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctattggagttctacttaggaaattttcccctgtgccaatgagttcaaggttctttcc 620

                                                                       
Query: 421 cactttctcttctattagagtcaatgtgtctggttttatgttaaggtccttgatccactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactttctcttctattagagtcaatgtgtctggttttatgttaaggtccttgatccactt 680

                                                                       
Query: 481 ggacttgagcttggtacaaggtgacaaatatggatctattttcattattttacatacaga 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggacttgagctttgtacaaggtgacaaatatggatctattttcattattttacatacaga 740

                                                                       
Query: 541 cagccagtaagaccatttagttttattatttgggaattttatagagtcagtagtagcaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagccagtaagaccatttagttttattatttgggaattttatagagtcagtagtagcaga 800

                                                                       
Query: 601 tatcagttgttatgtactatttgttggctacaacagtatcattgtacacataaattcata 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatcagttgttatgtactatttgttggctacaacagtatcattgtacacataaattcata 860

                                                                       
Query: 661 atacctgtaaaacatcaaggcatcaaaatctcagcatagcttctagccttttattgttta 720
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 861 atacctgtaaaacatcaaggcatcaaaatctcaggatagcttctagccttttattgttta 920

                                    
Query: 721 gtttttgttatgcacccatctcata 745
           |||||||||||||||||||||||||
Sbjct: 921 gtttttgttatgcacccatctcata 945


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 745
Length of database: 1145
Length adjustment: 10
Effective length of query: 735
Effective length of database: 1135
Effective search space:   834225
Effective search space used:   834225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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