BAC Information

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BAC

Clone NameMSMg01-146K19
ChromosomeX (Build37)
Map Location 135,568,507 - 135,633,084
singlet/doubletdoublet
Overlap geneSerpina7, 4930513O06Rik
Upstream geneIl1rapl2, 1700025D03Rik, Nrk
Downstream gene4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2, Morc4, Rbm41, Gm719, E230019M04Rik, LOC622213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146K19.T7 (MSMg01no146_k19.b1)MSMg01-146K19.TJ (MSMg01no146_k19.g1)
ACCAG350147AG350148
length1,2261,207
length of high quality
(start - end)		814 (91 - 904)600 (90 - 689)
definitionCHROMAT_FILE: MSMg01no146_k19.b1 PHD_FILE: MSMg01no146_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:43 2005CHROMAT_FILE: MSMg01no146_k19.g1 PHD_FILE: MSMg01no146_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,632,271 - 135,633,084)(135,568,507 - 135,569,106)
sequence
NNCCGAGTCTTTTTNATACATTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAATACCATACAGTGGCCATTAAGAGTTGGCAGCTGG
CAAAATTATACACCTGCTTGCGCTAGAGGCAAATCTTACCGAGCTTCTGT
GCACAGTCTGAAGCTGCCCCATAGCCTATACCTGAGATGAAAACAAAAAC
GCAGTCCCATAAGATTTCTGTGTTTTTCAAAGAAATCAAAATTCTCACTA
CATGATTCCATGTGGCTTTTTTTCCAAGCATCTTTAGTGTTATCCATCCC
TCTTCCAGCCCTACCCCTCTGTGTTATCCCCTCTCCCCCTTCCCAGTTAA
AGAGCTTCTTCCTGCTTTTCCCATTTCCACTTTCATTACACTGTCCTGCT
ATTCCCATCTCAGGAATTCCTTCTCTCCCCACATTGATTCCTTCAACATA
CCCATTTTCTGGGTGATTGGGGAGGGTAAAGGAATAGAAGCATTAGAAGG
GCTCACCCATGGAAAAAGACTGTAGGATATGGCTGAGTGGAGAGACTTTA
CATTGTGTTATACACAGATATTTAATGAACATAATTTCCATTGTAGGGGT
AGTACATGGAGGAACAGCTACTGGAATGCCTCCCCCTCAATGTGATAGCC
TTTGCAATGTCATTGAAAGTTCATAAATGTGAAGTAACTGATGACATATT
TGCTACACTTATATTCATTATTTTTTCTTACTTTGAAGAAAGTAATTCTG
GGCGAGAGAGCAGAAAAGGAGAAGGCCTTGTACTGGCTTTAAGCAGTGGC
CTGGTCATGACTTCCTTGTATGAGTCTTGTTTTTACCTCAGTTTCCCAGA
ACTACTTATAGCACTAGGTCCCACTTCCAGACAATAAGTGGGATCATTCT
GAGACCACCAGATTAGCAGGCTTAGAGAAACATGAGCTCATGATTATAGA
AAATACTCTTTGGAAGACCAACTGTGGTCCAACATTCCTTTTTTTGTGAG
TATTAAATGGGTCCCAATAAAAGGAAACAACCTTCCTGGGCCTTCTCTTG
GAAGGGCTTTTTTTTACTTCCCCAGGGTTTTTTGAACCCCCCTCTTCTTT
ATAACCCCTTTCTGGTCCTCCTCATTAAATTTGAGAAAAATACCCGGTTT
GTTTATTCCACTGGGGGGGTCTTCTCTCTGTTTTTGTTTCAAAAGTGGGT
AAATACCACAGAGTAGATTCTTTTTT

NCCCTTTTTTTTTTNTTCACAAGGNAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTAAAAAATTTAAGATT
AGATTAAACTATTTTTTAACTACAAATGTGGAAACATTTGCCCGAGCTTG
AGTCTAAAGGGATGTGGAAACTCTCTGGGAGGATATGTGTTATTTCTTGA
TTTGATAATGGATTTTTGAGACTGCATATATGTGTGAAAACTCATGTAAC
TGTATACTTCCAATGCAATTATTTTTCTTCGTGTAAATTATAATAAAATA
AGAACATGCATGTAGGGGCAAATACAGTAGTGCTGTAGATAGCAATGAGA
TGAGAGGAGGTGGGATTGGAAACATTTTTGCAGGAGTGAAGATAATTAAA
AAGACACTTGTGCTTCATCTATCAGATTGTTAAGAAAACTTACCTTGGCA
ACCCTATAGGAGGATCAACAATATGAATTAACCAGTACCCCGCCCCCCCC
CCAGAACTGTGTCTCTAGTTGCATATGTAGCAGAGGATGGTCTAGTTGGT
CATCAATGTGAGGAGAGGCCCTTGGCCTAGCCTGTTAAGGCCCATGCTCT
GAACTTAACAACCCTGGTGACAATAGAATGCTAAGAGGAAATGGGAGAAG
ATAAGTTAGTGGATATGGAGAAACTGGAAACTCATATGTTGTTAAACTTT
TAAGTTCTGCTTTGCAAGTTGAGTAAAAGAATATGGTGTAAGTAATCAAG
GAAGTGACTTCATGAAATAATTCCCTATATGACTGATGAAAATGAGATAT
AATTACCTTTATATGATCAATCCACTAAAGTATAAAATATATGTGAAATT
TAAAGAAATTTAGTTGTATCTCAGTTATAAATATCCATAAGGACTACAAT
TATATTTTCACACTTTTGGTTTTATACCTGGTATTTCAATTCTTATTCAC
TAATTTTTAATTATTAGGTCAATTGGTTTCTATTATTATATTCTTCTCTC
ATTTTTTAAATCTTTTCCTTCTAAATTCTTAACCATTAAATGTTTTTTCA
CTTCTCTAATTTTTTAATATATCTCTTTTTTTTCTTTTTATTTTTTCAAT
TTTTATCTTTCTCTTTTTTTTATTTTCTCTTCTCCGATTTTTGCTTTCCT
CTTTTATACTTTTCTTCATTATTTATATTTCTCTCTTTCTTCTTTTTATT
ATCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_k19.b1 MSMg01no146_k19.b1 CHROMAT_FILE:
MSMg01no146_k19.b1 PHD_FILE: MSMg01no146_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:43 2005
         (814 letters)



>mm_chrX_135631909_135633122
          Length = 1214

 Score = 1497 bits (774), Expect = 0.0
 Identities = 804/814 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    tggcagctggcaaaattatacacctgcttgcgctagaggcaaatcttaccgagcttctgt 60
            |||||||||||||||||||||||||| ||| || ||||||||||||||  ||||||||||
Sbjct: 1176 tggcagctggcaaaattatacacctgtttgagcaagaggcaaatcttagtgagcttctgt 1117

                                                                        
Query: 61   gcacagtctgaagctgccccatagcctatacctgagatgaaaacaaaaacgcagtcccat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 gcacagtctgaagctgccccatagcctatacctgagatgaaaacaaaaacgcagtcccat 1057

                                                                        
Query: 121  aagatttctgtgtttttcaaagaaatcaaaattctcactacatgattccatgtggctttt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 aagatttctgtgtttttcaaagaaatcaaaattctcactacatgattccatgtggctttt 997

                                                                        
Query: 181  tttccaagcatctttagtgttatccatccctcttccagccctacccctctgtgttatccc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  tttccaagcatctttagtgttatccatccctcttccagccctacccctctgtgttatccc 937

                                                                        
Query: 241  ctctcccccttcccagttaaagagcttcttcctgcttttcccatttccactttcattaca 300
            ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 936  ctctcccccttcccagttaaagagcttcttcctgcttttcccatttttactttcattaca 877

                                                                        
Query: 301  ctgtcctgctattcccatctcaggaattccttctctccccacattgattccttcaacata 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876  ctgtcctgctattcccatctcaggaattccttctctccccacattgattccttcaacata 817

                                                                        
Query: 361  cccattttctgggtgattggggagggtaaaggaatagaagcattagaagggctcacccat 420
            |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 816  cccattttctgggtgattggggagggtataggaatagaagcatcagaagggctcacccat 757

                                                                        
Query: 421  ggaaaaagactgtaggatatggctgagtggagagactttacattgtgttatacacagata 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  ggaaaaagactgtaggatatggctgagtggagagactttacattgtgttatacacagata 697

                                                                        
Query: 481  tttaatgaacataatttccattgtaggggtagtacatggaggaacagctactggaatgcc 540
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 696  tttaatgaacataatttccattgtaggggtagtatatggaggaacagctactggaatgcc 637

                                                                        
Query: 541  tccccctcaatgtgatagcctttgcaatgtcattgaaagttcataaatgtgaagtaactg 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636  tccccctcaatgtgatagcctttgcaatgtcattgaaagttcataaatgtgaagtaactg 577

                                                                        
Query: 601  atgacatatttgctacacttatattcattattttttcttactttgaagaaagtaattctg 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  atgacatatttgctacacttatattcattattttttcttactttgaagaaagtaattctg 517

                                                                        
Query: 661  ggcgagagagcagaaaaggagaaggccttgtactggctttaagcagtggcctggtcatga 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516  ggcgagagagcagaaaaggagaaggccttgtactggctttaagcagtggcctggtcatga 457

                                                                        
Query: 721  cttccttgtatgagtcttgtttttacctcagtttcccagaactacttatagcactaggtc 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456  cttccttgtatgagtcttgtttttacctcagtttcccagaactacttatagcactaggtc 397

                                              
Query: 781  ccacttccagacaataagtgggatcattctgaga 814
            ||||||||||||||||||||||||||||||||||
Sbjct: 396  ccacttccagacaataagtgggatcattctgaga 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 814
Length of database: 1214
Length adjustment: 10
Effective length of query: 804
Effective length of database: 1204
Effective search space:   968016
Effective search space used:   968016
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no146_k19.g1 MSMg01no146_k19.g1 CHROMAT_FILE:
MSMg01no146_k19.g1 PHD_FILE: MSMg01no146_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:44 2005
         (600 letters)



>mm_chrX_135568307_135569306
          Length = 1000

 Score = 1114 bits (576), Expect = 0.0
 Identities = 594/600 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttaagattagattaaactattttttaactacaaatgtggaaacatttgcccgagctt 60
           ||||||||||||||||||||||||||||||||| |||||||||||||||||   || |||
Sbjct: 201 aatttaagattagattaaactattttttaactataaatgtggaaacatttgattgaactt 260

                                                                       
Query: 61  gagtctaaagggatgtggaaactctctgggaggatatgtgttatttcttgatttgataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtctaaagggatgtggaaactctctgggaggatatgtgttatttcttgatttgataat 320

                                                                       
Query: 121 ggatttttgagactgcatatatgtgtgaaaactcatgtaactgtatacttccaatgcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatttttgagactgcatatatgtgtgaaaactcatgtaactgtatacttccaatgcaat 380

                                                                       
Query: 181 tatttttcttcgtgtaaattataataaaataagaacatgcatgtaggggcaaatacagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttttcttcgtgtaaattataataaaataagaacatgcatgtaggggcaaatacagta 440

                                                                       
Query: 241 gtgctgtagatagcaatgagatgagaggaggtgggattggaaacatttttgcaggagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgctgtagatagcaatgagatgagaggaggtgggattggaaacatttttgcaggagtga 500

                                                                       
Query: 301 agataattaaaaagacacttgtgcttcatctatcagattgttaagaaaacttaccttggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agataattaaaaagacacttgtgcttcatctatcagattgttaagaaaacttaccttggc 560

                                                                       
Query: 361 aaccctataggaggatcaacaatatgaattaaccagtaccccgccccccccccagaactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccctataggaggatcaacaatatgaattaaccagtaccccgccccccccccagaactg 620

                                                                       
Query: 421 tgtctctagttgcatatgtagcagaggatggtctagttggtcatcaatgtgaggagaggc 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 tgtctctagttgcatatgtagcagaggatggtctagttggccatcaatgtgaggagaggc 680

                                                                       
Query: 481 ccttggcctagcctgttaaggcccatgctctgaacttaacaaccctggtgacaatagaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttggcctagcctgttaaggcccatgctctgaacttaacaaccctggtgacaatagaat 740

                                                                       
Query: 541 gctaagaggaaatgggagaagataagttagtggatatggagaaactggaaactcatatgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctaagaggaaatgggagaagataagttagtggatatggagaaactggaaactcatatgt 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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