Query= MSMg01no147_b19.b1 MSMg01no147_b19.b1 CHROMAT_FILE:
MSMg01no147_b19.b1 PHD_FILE: MSMg01no147_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:37 2005
(683 letters)
>mm_chrX_153987211_153988292
Length = 1082
Score = 1205 bits (623), Expect = 0.0
Identities = 671/705 (95%), Gaps = 29/705 (4%)
Strand = Plus / Minus
Query: 7 gaattcaaggccatcctctttagctacatagtaggttccagaccagcactggccacatag 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 gaattcaaggccatcatctttagctacatagtaggttccagaccagcactggccacatag 984
Query: 67 caagacccttttgtgcatgcatacatgcacaggcg------------------------- 101
||||||||||| |||||||||||||||||||||||
Sbjct: 983 caagaccctttcgtgcatgcatacatgcacaggcgcgcacacacacccacccacccaccc 924
Query: 102 ---cacacacacacacacacacacacacacgcacatacacaaaatcattaatgattggaa 158
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 acacacacacacacacacacacacacacacgcacatacacaaaatcattaatgattggaa 864
Query: 159 ggaagctagaccttggttgaatggaaagtagagcaagtgctcttggttttataactcttg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ggaagctagaccttggttgaatggaaagtagagcaagtgctcttggttttataactcttg 804
Query: 219 tctttatcttatttgaaaagtattttaaagtttaatggtgtattattctgtactctggtt 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tctttatcttatttgaaaagtattttaaagtttaatggtgtattattctgtactctggtt 744
Query: 279 acaattttatgaaagtatctgctaacatgaaagcaaaaactctgtacaagtgctatcaag 338
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acaattctatgaaagtatctgctaacatgaaagcaaaaactctgtacaagtgctatcaag 684
Query: 339 taaatgagcaatgttgaaagcagataaggcttgcgatgtgataagacagtttgtcgcaca 398
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 683 taaatgagcaatgttgaaagcagataaggcttgtgatgtgataagacagtttgtcgcaca 624
Query: 399 agtattacatttttcgtagtgtaagttcacactcaacatttttaagccttgttatatata 458
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 623 agtattacatttttcatagtgtaagtt-acactcaacatttttaagccttgttatatata 565
Query: 459 gagtatgctgcaggaagggtctctcacggcagcatgtgagctcaggcagttagaggtgaa 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagtatgctgcaggaagggtctctcacggcagcatgtgagctcaggcagttagaggtgaa 505
Query: 519 cttgagaactaagctgagtcctctaacagatcacaacagaacttcagcaaacctacttaa 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttgagaactaagctgagtcctctaacagatcacaacagaacttcagcaaacctacttaa 445
Query: 579 ccacttcctagagctttgcagcttagaactcttccagagtagactttttcctttgtgctg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccacttcctagagctttgcagcttagaactcttccagagtagactttttcctttgtgctg 385
Query: 639 caagaacattcaaccttgagccatactctgtcgtcaccagcacct 683
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caagaacattcaaccttgagccatactctgtcgtcaccagcacct 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space: 721456
Effective search space used: 721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_b19.g1 MSMg01no147_b19.g1 CHROMAT_FILE:
MSMg01no147_b19.g1 PHD_FILE: MSMg01no147_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:37 2005
(639 letters)
>mm_chrX_153864573_153865611
Length = 1039
Score = 1220 bits (631), Expect = 0.0
Identities = 637/639 (99%)
Strand = Plus / Plus
Query: 1 atttgaactgtactgttaagtttctaaaacttagcattatttaatggcaataactcccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgaactgtactgttaagtttctaaaacttagcattatttaatggcaataactcccaa 260
Query: 61 tcataaccactcagatgatcaattccatctaatcacccatgttcctttaatagtgaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcataaccactcagatgatcaattccatctaatcacccatgttcctttaatagtgaaaaa 320
Query: 121 gctgcagtatttttgtttgaagccaacacaccaagtcccgtggtatactataattaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgcagtatttttgtttgaagccaacacaccaagtcccgtggtatactataattaagaa 380
Query: 181 caactgtttactttttcttaaatacaataccctgcacccccacctcaaaagctagacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactgtttactttttcttaaatacaataccctgcacccccacctcaaaagctagacatt 440
Query: 241 aaagtactaaatataatgatcttggtaagccaaattgctatgtttctagaagcccttccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtactaaatataatgatcttggtaagccaaattgctatgtttctagaagcccttccc 500
Query: 301 tgctgtttcccttaaacatttctatctgaaatgatagaaaaagaaaaaaaaatagaaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctgtttcccttaaacatttctatctgaaatgatagaaaaagaaaaaaaaatagaaacc 560
Query: 361 tgggaaatatgcagctacatactttgaccatatcttccacctaacaaccagtgtttccgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggaaatatgcagctacatactttgaccatatcttccacctaacaaccagtgtttccgt 620
Query: 421 ttgagcacataaaaacattcactgctctctctatatcctttgttctgtcttaaacatttt 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgagcacataaaaacattcactggtctctctatatcctttgttctgtcttaaacatttt 680
Query: 481 ttgttttcatgcacattgttctaatgcttatgtatacaccagccgaaaagtcagtctccc 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgttttcacgcacattgttctaatgcttatgtatacaccagccgaaaagtcagtctccc 740
Query: 541 tggtaaatgggcagatgatgggatcttgttgaaatttttcagtcttcttggttcctttaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtaaatgggcagatgatgggatcttgttgaaatttttcagtcttcttggttcctttaa 800
Query: 601 taaacatataaaaatatccaagatgctattaaataaatg 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaacatataaaaatatccaagatgctattaaataaatg 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
